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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0209700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0236) R2 : 0.00937
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.103 (0.0497) R2dN8 : 0.0121 R2N8 : 0.00937
σ : 0.444
deviance : 90.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.67 0.44 3.47 -0.0652 0.124 0.816 0.303 -3.09 0.106 14.7 49.98 26 -- --
89.34 0.444 3.46 -0.0188 0.136 -0.0723 0.255 -- 0.101 15.3 50.03 36 -- --
87.96 0.437 3.47 -0.0581 0.124 0.832 -- -2.99 0.107 14.7 49.01 21 -- --
89.51 0.441 3.46 -0.0197 0.145 -0.0447 -- -- 0.0991 15.2 61 33 -- --
88.81 0.439 3.47 -0.0667 -- 0.881 -- -2.95 0.107 -- 49.29 22 -- --
89.38 0.443 3.46 -0.0207 0.131 -- 0.246 -- 0.103 15.3 -- -- -- --
89.58 0.443 3.46 -0.016 0.132 -- -- -- 0.104 15.4 -- -- -- --
90.31 0.443 3.46 -0.0332 -- 0.141 -- -- 0.107 -- 51.31 143 -- --
89.5 0.441 3.46 -- 0.147 -0.0534 -- -- 0.1 15.3 59.05 24 -- --
90.56 0.445 3.46 -0.0215 -- -- -- -- 0.101 -- -- -- -- --
89.58 0.443 3.46 -- 0.132 -- -- -- 0.106 15.4 -- -- -- --
90.12 0.442 3.46 -- -- 0.136 -- -- 0.1 -- 55 307 -- --
90.57 0.444 3.46 -- -- -- -- -- 0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.54 wind 1.0 10 < th dose dependent rect. 14 8
2 80.75 wind 1.0 10 < th dose independent rect. 14 8
3 80.77 wind 1.0 10 < th dose independent rect. 21 1
10 80.77 wind 1.0 10 < th dose dependent rect. 21 1
17 83.47 temperature 20.0 30 > th dose dependent rect. 2 1
18 83.51 atmosphere 1005.0 30 > th dose dependent rect. 2 1
19 83.53 temperature 20.0 30 > th dose independent rect. 2 1
22 83.71 wind 3.0 30 < th dose dependent rect. 2 1
23 83.72 wind 1.0 30 < th dose independent rect. 2 1
27 83.81 atmosphere 1005.0 30 > th dose independent rect. 2 1
30 83.83 temperature 25.0 30 < th dose independent rect. 2 1
32 83.85 humidity 80.0 30 > th dose independent rect. 2 1
34 83.90 wind 5.0 30 < th dose independent rect. 2 1
38 83.91 temperature 10.0 30 > th dose independent rect. 2 1
41 83.91 humidity 50.0 30 > th dose independent rect. 2 1
45 83.91 atmosphere 1010.0 30 < th dose independent rect. 2 1
47 83.91 radiation 1.0 30 < th dose independent rect. 2 1
52 83.91 precipitation 0.1 270 > th dose independent rect. 20 1
53 83.91 precipitation 0.1 30 < th dose independent rect. 2 1
54 83.91 temperature 10.0 30 > th dose independent rect. 3 23
55 83.91 humidity 50.0 30 > th dose dependent rect. 2 1
58 83.91 radiation 1.0 30 < th dose dependent rect. 2 1
63 83.91 precipitation 0.1 270 > th dose dependent rect. 20 1
64 83.91 precipitation 0.1 30 < th dose dependent rect. 2 1
67 84.27 atmosphere 1015.0 30 < th dose dependent rect. 2 1
74 84.51 temperature 30.0 30 < th dose dependent rect. 2 1
77 84.56 humidity 50.0 90 > th dose independent rect. 3 23
115 84.91 wind 1.0 30 > th dose independent rect. 2 1
117 84.95 atmosphere 995.0 90 > th dose independent rect. 3 23
120 85.05 precipitation 0.1 90 < th dose independent rect. 3 23
121 85.05 precipitation 0.1 90 < th dose dependent rect. 3 23
122 85.06 radiation 1.0 14400 < th dose dependent rect. 3 1
134 85.18 wind 9.0 1440 < th dose independent rect. 3 1
135 85.18 temperature 10.0 1440 > th dose independent rect. 3 1
138 85.18 temperature 30.0 1440 < th dose independent rect. 3 1
142 85.18 humidity 50.0 1440 > th dose independent rect. 3 1
151 85.18 atmosphere 995.0 1440 > th dose independent rect. 3 1
152 85.18 radiation 1.0 1440 < th dose independent rect. 3 1
172 85.18 temperature 10.0 1440 > th dose independent rect. 4 23
202 85.48 humidity 60.0 90 > th dose independent rect. 1 10
244 85.77 temperature 30.0 90 < th dose independent rect. 3 23
248 85.81 wind 1.0 10 > th dose independent rect. 11 14
251 85.82 temperature 10.0 90 > th dose dependent rect. 7 15
258 85.87 precipitation 0.1 10 < th dose independent rect. 4 22
260 85.87 precipitation 0.1 10 < th dose dependent rect. 4 22
264 85.90 temperature 15.0 90 > th dose independent rect. 1 10
278 85.94 wind 7.0 90 < th dose independent rect. 1 10
367 86.06 precipitation 0.1 90 < th dose independent rect. 1 10
368 86.06 precipitation 0.1 90 < th dose dependent rect. 1 10
371 86.07 atmosphere 995.0 90 > th dose independent rect. 1 10
372 86.07 atmosphere 1015.0 90 < th dose independent rect. 1 10
373 86.07 temperature 10.0 90 > th dose independent rect. 11 14
377 86.11 humidity 90.0 90 < th dose independent rect. 2 1
399 86.23 humidity 80.0 30 < th dose independent rect. 15 20
405 86.27 temperature 10.0 1440 > th dose independent rect. 2 10
408 86.27 atmosphere 995.0 1440 > th dose independent rect. 2 10
409 86.27 temperature 10.0 1440 > th dose independent rect. 12 14
439 86.33 wind 9.0 30 < th dose dependent rect. 11 9
441 86.34 wind 9.0 90 < th dose independent rect. 11 14
447 86.35 humidity 80.0 30 < th dose independent rect. 13 22
459 86.40 temperature 10.0 90 > th dose dependent rect. 1 21
467 86.42 humidity 80.0 30 > th dose independent rect. 4 22
469 86.44 precipitation 0.1 30 < th dose independent rect. 11 14
470 86.44 radiation 10.0 90 > th dose independent rect. 15 19
473 86.44 precipitation 0.1 30 < th dose dependent rect. 11 14
477 86.46 wind 1.0 30 > th dose independent rect. 4 22
481 86.47 atmosphere 995.0 90 > th dose independent rect. 11 14
483 86.47 atmosphere 995.0 30 > th dose dependent rect. 1 10
491 86.49 temperature 30.0 90 < th dose independent rect. 11 14
509 86.51 wind 9.0 30 < th dose independent rect. 4 22
515 86.54 wind 3.0 10 < th dose independent rect. 11 9
528 86.60 wind 9.0 10 < th dose dependent rect. 1 10
543 86.64 wind 3.0 4320 > th dose dependent rect. 5 2
559 86.67 humidity 50.0 90 > th dose independent rect. 11 14
567 86.68 temperature 10.0 30 > th dose dependent rect. 1 10
576 86.70 temperature 20.0 10 > th dose dependent rect. 21 5
580 86.71 atmosphere 1015.0 30 < th dose independent rect. 4 22
608 86.73 temperature 30.0 30 < th dose dependent rect. 11 14
621 86.75 radiation 40.0 90 < th dose independent rect. 1 10
641 86.78 wind 3.0 30 < th dose independent rect. 11 7
724 86.82 temperature 15.0 30 > th dose dependent rect. 15 7
746 86.83 humidity 80.0 30 > th dose independent rect. 22 22
792 86.84 humidity 90.0 270 < th dose independent rect. 1 18
801 86.84 wind 5.0 30 < th dose dependent rect. 2 18
811 86.85 atmosphere 1005.0 90 > th dose dependent rect. 20 1
816 86.85 temperature 15.0 10 > th dose dependent rect. 15 20
825 86.86 wind 9.0 30 < th dose dependent rect. 11 14
827 86.87 wind 5.0 30 < th dose dependent rect. 2 10
829 86.88 precipitation 0.1 43200 > th dose independent rect. 24 1
834 86.88 precipitation 0.1 43200 > th dose dependent rect. 24 1
838 86.89 wind 1.0 4320 > th dose independent rect. 3 1
844 86.90 precipitation 0.1 43200 < th dose independent rect. 24 1
847 86.90 precipitation 0.1 43200 < th dose dependent rect. 24 1
860 86.92 wind 1.0 720 > th dose independent rect. 9 6
873 86.92 radiation 1.0 90 > th dose dependent rect. 15 19
874 86.92 humidity 90.0 10 < th dose dependent rect. 15 20
890 86.95 temperature 20.0 270 > th dose dependent rect. 21 1
893 86.95 temperature 10.0 30 > th dose dependent rect. 15 13
894 86.96 wind 1.0 720 < th dose independent rect. 13 10
898 86.96 wind 5.0 30 < th dose dependent rect. 11 7
901 86.96 atmosphere 995.0 90 > th dose dependent rect. 11 14
905 86.96 temperature 25.0 10 > th dose dependent rect. 13 22
917 86.98 humidity 90.0 270 < th dose independent rect. 21 1
918 86.98 wind 7.0 4320 < th dose independent rect. 5 3
919 86.98 wind 9.0 4320 < th dose independent rect. 24 8
934 86.99 humidity 50.0 1440 > th dose independent rect. 3 8
936 86.99 wind 9.0 10 < th dose independent rect. 11 23
942 87.00 wind 3.0 4320 > th dose independent rect. 3 4
944 87.00 temperature 30.0 90 < th dose independent rect. 1 10
946 87.00 wind 3.0 30 < th dose independent rect. 2 18
953 87.01 wind 1.0 4320 < th dose independent rect. 3 1
964 87.02 atmosphere 1015.0 30 < th dose independent rect. 11 14
972 87.03 atmosphere 1005.0 30 > th dose independent rect. 1 10
975 87.03 wind 7.0 30 < th dose independent rect. 1 21
976 87.03 wind 9.0 43200 > th dose dependent rect. 21 9
984 87.04 wind 1.0 90 > th dose independent rect. 1 9
992 87.04 wind 9.0 30 < th dose dependent rect. 2 22