Os06g0209500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0209500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.7 | 0.18 | 10.9 | 1.14 | 0.0535 | -0.563 | 0.217 | 1.33 | 0.318 | 7.51 | 14 | 1625 | -- | -- |
| 16.16 | 0.187 | 10.9 | 0.852 | 0.0685 | -0.556 | 0.232 | -- | 0.245 | 6.61 | 11.57 | 1486 | -- | -- |
| 14.81 | 0.179 | 10.9 | 1.14 | 0.0648 | -0.56 | -- | 1.32 | 0.317 | 6.66 | 13.9 | 1543 | -- | -- |
| 16.28 | 0.188 | 10.9 | 0.846 | 0.078 | -0.546 | -- | -- | 0.239 | 5.87 | 13.69 | 1441 | -- | -- |
| 14.95 | 0.18 | 10.9 | 1.15 | -- | -0.564 | -- | 1.33 | 0.319 | -- | 14.9 | 1730 | -- | -- |
| 21.21 | 0.216 | 11 | 0.667 | 0.0608 | -- | 0.249 | -- | 0.139 | 7.66 | -- | -- | -- | -- |
| 21.38 | 0.217 | 11 | 0.672 | 0.0622 | -- | -- | -- | 0.138 | 7.12 | -- | -- | -- | -- |
| 16.36 | 0.188 | 10.9 | 0.856 | -- | -0.55 | -- | -- | 0.242 | -- | 13.43 | 1909 | -- | -- |
| 32.19 | 0.264 | 11 | -- | 0.0179 | -0.277 | -- | -- | 0.1 | 17.1 | 16.44 | 408 | -- | -- |
| 21.58 | 0.217 | 11 | 0.674 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 33.3 | 0.27 | 11 | -- | 0.0702 | -- | -- | -- | 0.0632 | 6.51 | -- | -- | -- | -- |
| 32.21 | 0.264 | 11 | -- | -- | -0.269 | -- | -- | 0.0983 | -- | 15.93 | 410 | -- | -- |
| 33.55 | 0.27 | 11 | -- | -- | -- | -- | -- | 0.0645 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.76 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 2 | 13.78 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 12 |
| 18 | 13.88 | humidity | 80 | 14400 | > th | dose dependent | sin | 11 | NA |
| 56 | 14.07 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 105 | 14.26 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 122 | 14.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 128 | 14.31 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 153 | 14.36 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 162 | 14.38 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 191 | 14.43 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 198 | 14.44 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 219 | 14.46 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 227 | 14.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 250 | 14.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 275 | 14.53 | humidity | 80 | 14400 | > th | dose dependent | no | NA | NA |
| 301 | 14.57 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 309 | 14.58 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 11 |
| 315 | 14.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 333 | 14.61 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 356 | 14.64 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 377 | 14.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 411 | 14.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 412 | 14.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 417 | 14.70 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 434 | 14.71 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 439 | 14.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 449 | 14.72 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 462 | 14.72 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 485 | 14.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 501 | 14.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 533 | 14.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 15 |
| 544 | 14.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 18 |
| 591 | 14.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 654 | 14.76 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 668 | 14.76 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 669 | 14.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 671 | 14.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 5 |
| 738 | 14.77 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 742 | 14.77 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 772 | 14.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 14 |
| 810 | 14.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 814 | 14.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 823 | 14.78 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 838 | 14.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 846 | 14.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 9 |
| 861 | 14.78 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 906 | 14.79 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 916 | 14.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 917 | 14.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 921 | 14.79 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 967 | 14.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 983 | 14.80 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |