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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0208200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.78 (0.103) R2 : 0.254
β1 : -4.72 (0.777) R2dD : 1.04 R2D : -0.76
β2 : 0.437 (0.124) R2dC : 0.0205 R2C : -0.131
β3 : 2.93 (0.459) R2dE : 0.795 R2E : -0.5
β4 : 2.55 (0.471) R2dD*C : 0.0485 R2D*C : -0.107
β5 : -17.5 (3.87) R2dD*E : 0.823 R2D*E : -1.31
γ1 : -0.415 (0.121) R2dN8 : 0.0305 R2N8 : -0.0994
σ : 0.983
deviance : 437.74
__
_____
C
peak time of C : 23.7
E
wheather : temperature
threshold : 29.16
memory length : 1449
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
437.74 0.983 5.78 -4.72 0.437 2.93 2.55 -17.5 -0.415 23.7 29.16 1449 -- --
464.49 1.01 5.48 -1.39 0.948 1.91 2.92 -- -0.624 0.398 5.424 38008 -- --
459.34 0.998 5.76 -4.59 0.51 2.85 -- -16.3 -0.346 20.8 29.27 1368 -- --
485.98 1.03 5.52 -1.94 0.582 1.52 -- -- -0.788 21.5 -16.81 7794 -- --
474.42 1.01 5.72 -4.39 -- 2.88 -- -16 -0.342 -- 29.26 1264 -- --
501.94 1.05 5.41 -1.04 0.541 -- 2.6 -- -0.364 23.6 -- -- -- --
526.36 1.07 5.42 -1.13 0.618 -- -- -- -0.367 21.6 -- -- -- --
492.19 1.03 5.47 -1.63 -- 1.89 -- -- -0.664 -- -9.915 824 -- --
543.89 1.09 5.43 -- 0.58 0.93 -- -- -0.375 20.8 -6.635 1256 -- --
548.91 1.09 5.41 -1.13 -- -- -- -- -0.368 -- -- -- -- --
560.11 1.11 5.4 -- 0.616 -- -- -- -0.241 21.4 -- -- -- --
554.37 1.1 5.42 -- -- 1.27 -- -- -0.401 -- 4.618 749 -- --
582.41 1.13 5.38 -- -- -- -- -- -0.243 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 426.06 radiation 40 14400 > th dose dependent rect. 15 17
2 428.42 radiation 40 14400 > th dose independent rect. 15 17
3 428.79 wind 9 14400 > th dose independent rect. 16 1
4 428.98 radiation 30 14400 < th dose independent rect. 16 12
5 429.33 radiation 30 14400 < th dose independent rect. 16 1
6 429.56 radiation 30 14400 < th dose independent rect. 16 9
7 429.83 radiation 40 14400 > th dose independent rect. 15 1
28 430.68 radiation 40 14400 > th dose dependent rect. 15 1
44 430.72 radiation 30 14400 < th dose independent rect. 16 6
65 432.94 wind 9 14400 > th dose dependent rect. 16 1
81 433.14 radiation 20 1440 < th dose dependent rect. 18 10
84 434.31 radiation 10 14400 > th dose independent rect. 5 1
96 434.37 wind 5 14400 < th dose independent rect. 11 1
97 435.49 temperature 10 30 > th dose dependent rect. 3 23
100 436.52 wind 5 14400 > th dose independent rect. 11 1
101 436.58 temperature 30 720 < th dose independent rect. 18 9
102 436.83 temperature 30 1440 < th dose independent rect. 15 21
104 436.87 radiation 10 1440 < th dose dependent rect. 18 7
105 436.95 temperature 30 1440 < th dose independent rect. 18 18
106 436.96 temperature 30 1440 > th dose dependent rect. 15 21
108 437.13 temperature 30 1440 > th dose independent rect. 15 21
109 437.27 temperature 30 1440 > th dose dependent rect. 17 19
110 437.35 temperature 30 1440 > th dose independent rect. 18 18
112 437.44 temperature 30 1440 < th dose independent rect. 10 1
113 437.48 temperature 30 1440 > th dose independent rect. 9 3
115 437.89 temperature 30 1440 < th dose independent sin 10 NA
116 437.90 temperature 30 1440 > th dose dependent rect. 10 2
119 438.11 temperature 30 1440 < th dose independent rect. 3 9
126 438.33 temperature 30 1440 < th dose independent rect. 9 3
129 438.42 temperature 30 1440 < th dose independent sin 7 NA
131 438.44 temperature 30 1440 > th dose dependent sin 10 NA
136 438.58 temperature 30 1440 < th dose independent rect. 20 16
141 438.89 temperature 30 1440 < th dose independent rect. 6 6
150 439.05 wind 5 43200 > th dose independent rect. 10 5
154 439.28 temperature 30 1440 > th dose independent rect. 10 1
160 439.40 temperature 30 1440 > th dose dependent rect. 17 23
200 439.72 temperature 30 1440 > th dose dependent rect. 9 10
214 439.77 temperature 30 1440 > th dose dependent no NA NA
309 439.81 radiation 10 1440 < th dose dependent rect. 18 1
325 439.85 radiation 10 1440 < th dose dependent rect. 18 4
327 439.92 temperature 30 1440 > th dose dependent sin 3 NA
332 439.96 humidity 50 1440 > th dose independent rect. 15 2
359 440.11 temperature 30 1440 > th dose independent sin 7 NA
360 440.11 temperature 30 1440 > th dose independent sin 10 NA
362 440.12 humidity 50 1440 < th dose independent rect. 16 22
388 440.30 humidity 50 1440 < th dose independent rect. 15 2
390 440.32 temperature 30 1440 > th dose dependent rect. 15 1
393 440.34 temperature 30 1440 > th dose dependent rect. 15 4
460 440.49 temperature 15 720 > th dose dependent rect. 17 7
463 440.53 humidity 50 1440 < th dose dependent rect. 16 2
482 440.57 temperature 20 270 > th dose independent rect. 24 7
495 440.75 radiation 30 4320 < th dose independent rect. 24 8
496 440.75 humidity 50 1440 > th dose independent rect. 16 12
497 440.78 humidity 50 1440 > th dose independent rect. 16 9
531 440.97 humidity 50 1440 > th dose independent rect. 16 4
533 440.97 humidity 50 1440 > th dose independent rect. 16 6
534 440.97 humidity 50 1440 > th dose independent rect. 16 16
580 441.13 radiation 30 4320 < th dose independent rect. 20 12
584 441.14 radiation 30 4320 < th dose independent rect. 6 2
591 441.18 humidity 70 720 > th dose independent rect. 19 8
596 441.23 humidity 50 1440 < th dose dependent rect. 16 22
670 441.66 temperature 20 270 > th dose independent rect. 1 4
688 441.76 radiation 30 4320 < th dose independent rect. 3 5
713 441.86 radiation 1 1440 > th dose dependent rect. 18 1
754 442.34 temperature 25 1440 > th dose dependent rect. 7 1
799 442.99 wind 5 43200 > th dose dependent rect. 11 18
806 443.06 temperature 30 1440 < th dose independent rect. 18 23
808 443.08 humidity 50 1440 > th dose independent rect. 16 22
810 443.15 temperature 30 1440 > th dose independent rect. 18 23
818 443.21 radiation 1 1440 < th dose independent rect. 18 10
821 443.23 temperature 30 1440 < th dose independent rect. 3 20
831 443.27 temperature 30 1440 < th dose independent rect. 3 16
855 443.31 temperature 30 1440 > th dose independent rect. 9 10
893 443.37 wind 5 43200 > th dose independent rect. 10 19
895 443.38 temperature 20 270 > th dose independent rect. 14 16
897 443.38 temperature 30 1440 < th dose independent rect. 20 23
901 443.41 temperature 30 1440 < th dose independent rect. 6 17
904 443.41 wind 3 14400 > th dose dependent rect. 11 1
907 443.42 temperature 30 1440 < th dose independent rect. 6 23
914 443.44 temperature 30 1440 < th dose independent no NA NA
918 443.45 temperature 30 1440 < th dose independent rect. 6 13
924 443.46 temperature 30 1440 > th dose independent no NA NA