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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0207200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.02 (0.0664) R2 : 0.475
β1 : -3.47 (0.242) R2dD : 0.255 R2D : 0.135
β2 : 0.985 (0.157) R2dC : 0.0455 R2C : -0.025
β3 : -1.11 (0.226) R2dE : 0.0337 R2E : -0.0539
β4 : -2.31 (0.614) R2dD*C : 0.0165 R2D*C : -0.0369
β5 : -3.48 (1.02) R2dD*E : 0.0149 R2D*E : -0.0364
γ1 : -1.85 (0.148) R2dN8 : 0.274 R2N8 : 0.068
σ : 1.23
deviance : 680.4
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_____
C
peak time of C : 10.1
E
wheather : atmosphere
threshold : 1005
memory length : 4301
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
680.4 1.23 6.02 -3.47 0.985 -1.11 -2.31 -3.48 -1.85 10.1 1005 4301 -- --
697.65 1.23 5.99 -3.41 1.02 -1.3 -2.23 -- -1.89 10 1005 4300 -- --
701.49 1.23 6.03 -3.56 0.996 -1.1 -- -3.43 -1.86 10.1 1005 4301 -- --
718.22 1.25 5.99 -3.49 1 -1.28 -- -- -1.9 10.1 1005 4300 -- --
761.47 1.29 6.05 -3.58 -- -1.06 -- -3.59 -1.84 -- 1005 4291 -- --
749.45 1.28 5.93 -3.53 0.983 -- -2.21 -- -1.62 10.1 -- -- -- --
768.82 1.3 5.93 -3.62 0.994 -- -- -- -1.62 10.1 -- -- -- --
773.53 1.3 6.02 -3.42 -- -1.43 -- -- -1.77 -- 999.7 7307 -- --
1006.4 1.48 5.9 -- 1.04 -1.87 -- -- -1.46 10.4 999.2 6500 -- --
828.5 1.34 5.96 -3.63 -- -- -- -- -1.62 -- -- -- -- --
1113.48 1.56 5.84 -- 1.01 -- -- -- -1.22 10.4 -- -- -- --
1070.4 1.52 5.92 -- -- -1.83 -- -- -1.45 -- 999.6 6251 -- --
1175.99 1.6 5.87 -- -- -- -- -- -1.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 669.47 temperature 20 10 > th dose dependent rect. 16 4
2 669.52 atmosphere 1005 4320 < th dose independent rect. 5 1
3 670.16 atmosphere 1005 4320 > th dose independent rect. 5 1
4 670.52 atmosphere 1005 4320 < th dose independent rect. 2 4
6 670.72 atmosphere 1005 4320 > th dose independent rect. 20 11
8 670.79 atmosphere 1005 4320 > th dose independent rect. 2 4
12 671.04 atmosphere 1005 4320 > th dose independent rect. 20 14
19 671.26 atmosphere 1005 4320 < th dose independent rect. 2 1
24 671.35 atmosphere 1005 4320 > th dose independent rect. 3 1
37 671.63 atmosphere 1005 4320 < th dose independent rect. 20 11
42 671.72 atmosphere 1005 4320 < th dose independent rect. 20 13
55 671.95 atmosphere 1005 4320 > th dose independent rect. 1 8
71 672.29 humidity 50 270 > th dose independent rect. 16 23
90 672.51 humidity 50 270 > th dose independent rect. 5 23
100 672.60 humidity 80 90 < th dose dependent rect. 16 6
131 673.08 atmosphere 1005 4320 > th dose independent sin 8 NA
148 673.29 humidity 80 90 < th dose dependent rect. 16 14
151 673.35 atmosphere 1005 4320 < th dose independent sin 8 NA
212 674.45 temperature 20 270 > th dose dependent rect. 15 2
215 674.50 humidity 60 720 < th dose independent rect. 15 18
225 674.68 temperature 10 30 > th dose dependent rect. 6 14
251 675.15 humidity 60 720 < th dose dependent rect. 15 19
252 675.16 humidity 60 720 > th dose independent rect. 15 6
257 675.23 temperature 10 270 > th dose dependent rect. 4 15
277 675.57 humidity 60 720 < th dose independent rect. 15 4
294 675.86 temperature 25 10 > th dose dependent rect. 16 17
295 675.89 humidity 60 720 < th dose dependent rect. 15 3
301 675.96 radiation 30 90 < th dose independent rect. 3 16
305 676.01 humidity 50 270 > th dose independent rect. 7 23
346 676.43 humidity 50 270 > th dose independent sin 22 NA
370 676.72 humidity 50 270 > th dose independent rect. 9 14
392 676.85 humidity 70 270 > th dose independent rect. 17 10
397 676.89 humidity 70 270 < th dose independent rect. 17 1
409 677.09 temperature 30 270 < th dose independent rect. 17 10
419 677.38 atmosphere 1005 4320 > th dose independent rect. 20 2
421 677.39 atmosphere 995 270 > th dose dependent rect. 1 8
427 677.48 humidity 80 270 < th dose dependent rect. 14 8
469 678.01 temperature 30 270 < th dose independent rect. 13 12
485 678.29 humidity 60 720 < th dose dependent sin 12 NA
504 678.51 atmosphere 995 90 > th dose dependent rect. 3 16
521 678.67 humidity 60 720 < th dose independent sin 12 NA
541 678.88 humidity 70 90 < th dose independent rect. 16 4
553 678.88 humidity 80 90 < th dose dependent sin 13 NA
588 679.18 humidity 60 270 > th dose independent sin 13 NA
604 679.22 humidity 50 270 > th dose independent sin 10 NA
616 679.35 temperature 30 90 < th dose independent rect. 13 14
617 679.35 humidity 90 10 < th dose dependent rect. 16 17
627 679.46 atmosphere 995 14400 < th dose dependent rect. 14 1
641 679.52 temperature 30 90 < th dose independent sin 13 NA
656 679.61 humidity 50 720 > th dose independent rect. 15 15
660 679.67 atmosphere 1005 270 > th dose independent rect. 1 8
663 679.68 temperature 10 30 > th dose dependent rect. 4 16
673 679.75 humidity 50 270 > th dose independent sin 15 NA
711 680.07 temperature 30 720 > th dose dependent sin 12 NA
754 680.44 atmosphere 1005 4320 < th dose independent no NA NA
775 680.51 atmosphere 1005 4320 < th dose independent rect. 1 23
851 680.76 atmosphere 1005 4320 < th dose independent rect. 8 23
866 680.82 atmosphere 1000 90 > th dose dependent rect. 3 8
890 680.93 atmosphere 1005 4320 < th dose independent rect. 5 23
894 680.96 humidity 50 270 > th dose independent rect. 9 16
900 681.02 atmosphere 1005 4320 > th dose independent no NA NA
901 681.02 radiation 20 270 > th dose independent rect. 16 1
916 681.02 atmosphere 1005 4320 > th dose independent rect. 1 23
917 681.04 humidity 50 720 > th dose independent rect. 9 8
932 681.16 atmosphere 1000 90 > th dose dependent rect. 3 6
959 681.34 atmosphere 1005 4320 > th dose independent rect. 8 23
984 681.41 temperature 30 90 > th dose independent sin 13 NA