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Os06g0205100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.24 (0.0665) R2 : 0.664
β1 : -1.72 (0.226) R2dD : 0.0797 R2D : -0.0943
β2 : 2.77 (0.12) R2dC : 0.397 R2C : 0.398
β3 : -22.8 (2.63) R2dE : 3.09 R2E : -3.16
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -49.7 (5.77) R2dD*E : 2.94 R2D*E : -2.73
γ1 : -1.74 (0.1) R2dN8 : 0.309 R2N8 : 0.0789
σ : 0.864
deviance : 344.18
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_____
C
peak time of C : 7.09
E
wheather : radiation
threshold : 1.002
memory length : 1127
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.94
open length of G : 3.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.4 0.857 9.24 -1.8 2.76 -23.1 2.14 -50.2 -1.74 7.08 0.9995 1108 8.95 3.35
388.33 0.925 9.65 -0.535 2.83 -2.12 1.64 -- -1.67 7.14 5.745 171 10.5 3.15
344.18 0.864 9.24 -1.72 2.77 -22.8 -- -49.7 -1.74 7.09 1.002 1127 8.94 3.3
373.16 0.9 9.67 -0.495 2.76 -3.48 -- -- -1.7 7.18 2.04 239 10.8 3.23
743.33 1.27 9.36 -1.48 -- -22.5 -- -49.2 -1.66 -- 1.282 927 9.29 3.48
392.78 0.929 9.65 -0.508 2.82 -- 1.68 -- -1.66 7.12 -- -- -- --
400.22 0.937 9.65 -0.473 2.82 -- -- -- -1.66 7.14 -- -- -- --
762.32 1.29 9.64 -0.507 -- -3.74 -- -- -1.66 -- 2.128 459 10.7 4.11
380.45 0.908 9.65 -- 2.79 -3.17 -- -- -1.65 7.22 2.33 249 10.6 3.15
821.44 1.34 9.71 -0.42 -- -- -- -- -1.61 -- -- -- -- --
406.13 0.943 9.64 -- 2.82 -- -- -- -1.61 7.15 -- -- -- --
428.36 0.964 9.73 -- -- -3.12 -- -- -1.92 -- 49.23 600 11.3 4.34
826.1 1.34 9.7 -- -- -- -- -- -1.57 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 329.46 humidity 50 14400 > th dose dependent rect. 3 4
6 331.53 wind 3 43200 < th dose independent rect. 20 4
7 331.82 wind 3 43200 > th dose independent rect. 20 4
13 333.41 wind 3 43200 > th dose independent rect. 19 8
20 334.20 humidity 90 14400 < th dose dependent rect. 5 2
22 334.36 wind 3 43200 < th dose independent rect. 19 8
24 334.55 wind 1 43200 < th dose dependent rect. 10 3
25 334.56 wind 5 43200 < th dose dependent rect. 20 6
32 334.72 humidity 80 43200 < th dose dependent rect. 19 8
38 334.85 wind 7 14400 < th dose independent rect. 10 10
44 335.01 wind 7 14400 > th dose independent rect. 10 10
47 335.06 wind 7 43200 < th dose independent rect. 16 2
50 335.14 wind 7 14400 > th dose dependent rect. 10 11
70 335.57 wind 7 14400 > th dose dependent rect. 10 15
83 335.72 humidity 80 43200 > th dose independent rect. 20 6
93 335.83 wind 7 14400 > th dose independent rect. 5 15
96 335.86 humidity 80 43200 < th dose independent rect. 20 5
101 335.87 wind 1 43200 < th dose dependent rect. 8 6
107 335.92 humidity 80 43200 > th dose independent rect. 19 11
114 335.96 wind 7 14400 < th dose independent rect. 5 15
118 335.97 wind 7 14400 > th dose dependent sin 20 NA
120 335.99 wind 7 43200 > th dose independent rect. 16 2
123 336.00 wind 7 14400 < th dose independent rect. 7 13
125 336.01 humidity 80 43200 < th dose independent rect. 19 11
142 336.12 humidity 90 14400 < th dose dependent rect. 23 9
186 336.54 wind 7 14400 > th dose independent sin 22 NA
192 336.61 humidity 80 14400 < th dose independent rect. 22 1
193 336.62 humidity 80 43200 < th dose dependent rect. 20 1
200 336.71 wind 5 43200 < th dose dependent rect. 21 2
201 336.72 wind 7 14400 < th dose independent sin 22 NA
205 336.75 wind 1 43200 > th dose independent rect. 8 6
207 336.77 wind 3 43200 > th dose independent sin 14 NA
212 336.81 wind 1 43200 < th dose independent rect. 8 6
219 336.84 wind 7 14400 < th dose independent rect. 10 16
221 336.85 wind 7 14400 > th dose dependent rect. 24 21
226 336.87 wind 7 14400 > th dose independent rect. 10 16
282 337.13 humidity 90 43200 < th dose dependent rect. 23 1
289 337.19 wind 1 43200 < th dose independent rect. 11 2
347 337.43 wind 7 14400 > th dose independent rect. 24 20
377 337.51 wind 7 14400 > th dose independent rect. 5 20
378 337.51 wind 7 14400 < th dose independent rect. 24 20
392 337.55 wind 7 14400 > th dose dependent rect. 17 23
403 337.58 wind 7 14400 > th dose dependent rect. 15 23
406 337.60 wind 7 14400 > th dose dependent no NA NA
423 337.66 wind 7 14400 < th dose independent rect. 5 21
425 337.68 wind 3 43200 > th dose independent rect. 14 15
456 337.80 humidity 80 43200 > th dose independent sin 10 NA
471 337.87 wind 3 43200 < th dose independent sin 14 NA
480 337.93 wind 3 43200 > th dose independent rect. 13 18
485 337.94 wind 9 14400 < th dose independent rect. 17 21
512 338.03 humidity 80 43200 < th dose independent sin 10 NA
516 338.03 humidity 90 43200 < th dose dependent rect. 1 4
517 338.03 wind 7 14400 > th dose dependent rect. 20 23
525 338.06 wind 7 14400 > th dose dependent rect. 12 23
528 338.07 wind 1 43200 < th dose dependent rect. 23 3
567 338.21 wind 7 14400 > th dose independent rect. 15 23
615 338.42 humidity 80 43200 < th dose dependent sin 10 NA
620 338.45 wind 9 14400 < th dose independent sin 17 NA
623 338.48 wind 3 43200 < th dose independent rect. 14 14
662 338.65 wind 1 43200 > th dose independent rect. 11 2
666 338.67 wind 3 43200 > th dose independent rect. 9 19
705 338.82 wind 1 43200 < th dose dependent rect. 20 7
719 338.86 wind 7 14400 > th dose independent no NA NA
741 338.92 wind 3 43200 > th dose independent rect. 6 21
746 338.93 wind 7 14400 > th dose independent rect. 18 23
769 339.00 wind 3 43200 < th dose independent rect. 13 18
775 339.02 wind 7 14400 < th dose independent no NA NA
780 339.03 wind 1 43200 < th dose dependent rect. 18 9
784 339.04 wind 3 43200 > th dose independent rect. 9 22
785 339.05 humidity 80 43200 > th dose independent rect. 21 1
807 339.10 wind 1 43200 < th dose independent rect. 5 9
844 339.20 wind 5 43200 < th dose dependent sin 14 NA
856 339.24 wind 7 43200 > th dose dependent rect. 15 2
863 339.26 wind 1 43200 > th dose dependent rect. 18 9
878 339.32 wind 3 43200 < th dose independent rect. 9 19
931 339.53 humidity 80 43200 > th dose independent rect. 24 10
938 339.55 wind 9 14400 > th dose independent sin 17 NA
950 339.58 wind 1 43200 < th dose dependent rect. 24 1
986 339.71 wind 3 43200 < th dose independent rect. 6 21