Os06g0205000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Autophagy protein Apg12 family protein.
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Os06g0205000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Autophagy protein Apg12 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 231.3 | 0.715 | 3.5 | 0.69 | 0.584 | -1.86 | -0.0168 | 3.91 | 0.282 | 15.7 | 20.36 | 355 | -- | -- |
| 239.55 | 0.721 | 3.58 | 0.096 | 0.272 | -1.99 | 0.401 | -- | 0.0956 | 17.9 | 15.01 | 564 | -- | -- |
| 231.3 | 0.708 | 3.5 | 0.687 | 0.583 | -1.85 | -- | 3.89 | 0.281 | 15.7 | 20.35 | 356 | -- | -- |
| 238.72 | 0.72 | 3.57 | 0.0525 | 0.508 | -2.11 | -- | -- | 0.0835 | 15.6 | 1.906 | 424 | -- | -- |
| 237.77 | 0.718 | 3.5 | 0.585 | -- | -1.72 | -- | 3.03 | 0.236 | -- | 16.05 | 692 | -- | -- |
| 284.99 | 0.791 | 3.64 | -0.466 | 0.292 | -- | 0.317 | -- | -0.221 | 9.87 | -- | -- | -- | -- |
| 285.35 | 0.791 | 3.64 | -0.455 | 0.293 | -- | -- | -- | -0.221 | 9.57 | -- | -- | -- | -- |
| 242.96 | 0.726 | 3.58 | -0.019 | -- | -1.74 | -- | -- | 0.0445 | -- | 7.335 | 724 | -- | -- |
| 238.3 | 0.719 | 3.58 | -- | 0.481 | -2.07 | -- | -- | 0.0817 | 15.8 | 7.657 | 402 | -- | -- |
| 290.43 | 0.796 | 3.64 | -0.457 | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
| 290.81 | 0.798 | 3.62 | -- | 0.294 | -- | -- | -- | -0.17 | 9.69 | -- | -- | -- | -- |
| 242.97 | 0.726 | 3.58 | -- | -- | -1.75 | -- | -- | 0.0473 | -- | 6.969 | 724 | -- | -- |
| 295.95 | 0.803 | 3.63 | -- | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 225.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 228.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 4 | 229.11 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 5 | 229.20 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 8 | 230.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 16 | 231.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 48 | 232.37 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 59 | 232.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 69 | 232.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 21 |
| 82 | 233.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 83 | 233.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 90 | 233.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 135 | 233.83 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 145 | 233.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 146 | 233.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 147 | 233.93 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 184 | 234.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 6 |
| 185 | 234.32 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 223 | 234.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 229 | 234.62 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 10 |
| 290 | 234.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 16 |
| 298 | 234.96 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 19 |
| 361 | 235.15 | temperature | 25 | 4320 | < th | dose independent | sin | 18 | NA |
| 362 | 235.15 | temperature | 25 | 4320 | > th | dose dependent | sin | 0 | NA |
| 366 | 235.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 379 | 235.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 16 |
| 385 | 235.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 20 |
| 448 | 235.39 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 461 | 235.43 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 20 |
| 474 | 235.45 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 14 |
| 476 | 235.46 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 539 | 235.58 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 547 | 235.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 578 | 235.63 | temperature | 20 | 4320 | > th | dose dependent | sin | 14 | NA |
| 611 | 235.69 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 622 | 235.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 21 |
| 632 | 235.72 | temperature | 25 | 4320 | > th | dose independent | sin | 18 | NA |
| 699 | 235.81 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 709 | 235.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 786 | 235.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 20 |
| 805 | 235.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 22 |
| 839 | 236.01 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 849 | 236.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 892 | 236.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 22 |
| 953 | 236.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 992 | 236.17 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |