Os06g0203000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0203000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.06 | 0.486 | 4.79 | 1.95 | 0.138 | -1.44 | -0.373 | 0.251 | 0.0867 | 20.6 | 19.8 | 1449 | -- | -- |
| 107.1 | 0.482 | 4.79 | 1.88 | 0.14 | -1.45 | -0.347 | -- | 0.0677 | 21 | 19.49 | 1410 | -- | -- |
| 107.44 | 0.483 | 4.79 | 1.96 | 0.151 | -1.46 | -- | 0.225 | 0.084 | 21.8 | 19.59 | 1376 | -- | -- |
| 107.47 | 0.483 | 4.8 | 1.89 | 0.162 | -1.48 | -- | -- | 0.0648 | 22.1 | 19.4 | 1344 | -- | -- |
| 108.6 | 0.485 | 4.78 | 1.98 | -- | -1.43 | -- | 0.286 | 0.0879 | -- | 19.78 | 1441 | -- | -- |
| 169.48 | 0.61 | 4.87 | 1.35 | 0.161 | -- | -0.341 | -- | -0.271 | 19 | -- | -- | -- | -- |
| 169.73 | 0.61 | 4.87 | 1.36 | 0.164 | -- | -- | -- | -0.271 | 18.3 | -- | -- | -- | -- |
| 108.63 | 0.485 | 4.79 | 1.9 | -- | -1.44 | -- | -- | 0.0665 | -- | 19.54 | 1445 | -- | -- |
| 189.03 | 0.64 | 4.87 | -- | 0.193 | -0.906 | -- | -- | -0.259 | 22.1 | 21.8 | 1236 | -- | -- |
| 171.13 | 0.611 | 4.87 | 1.35 | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
| 218.19 | 0.691 | 4.91 | -- | 0.147 | -- | -- | -- | -0.422 | 18.8 | -- | -- | -- | -- |
| 190.4 | 0.643 | 4.86 | -- | -- | -0.855 | -- | -- | -0.26 | -- | 21.8 | 1391 | -- | -- |
| 219.32 | 0.691 | 4.9 | -- | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 3 | 106.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 28 | 106.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 35 | 106.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 39 | 107.00 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 42 | 107.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 21 |
| 53 | 107.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 13 |
| 67 | 107.08 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 79 | 107.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 185 | 107.72 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 738 | 108.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 811 | 109.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 872 | 109.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 963 | 109.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 984 | 109.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 10 |