Os06g0202900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0202900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.47 | 0.505 | 9.91 | 0.329 | 1.22 | -1.43 | -0.452 | 2.12 | 0.235 | 23.9 | 24.02 | 696 | -- | -- |
| 120 | 0.51 | 9.87 | 0.631 | 1.22 | -1.82 | -0.793 | -- | 0.323 | 24 | 22.88 | 669 | -- | -- |
| 116.25 | 0.502 | 9.92 | 0.303 | 1.22 | -1.4 | -- | 2.37 | 0.229 | 23.9 | 24.07 | 714 | -- | -- |
| 122.65 | 0.516 | 9.86 | 0.663 | 1.21 | -1.85 | -- | -- | 0.33 | 23.9 | 22.81 | 686 | -- | -- |
| 195.76 | 0.652 | 9.94 | -0.0225 | -- | -2.12 | -- | 2.75 | 0.0232 | -- | 27.95 | 847 | -- | -- |
| 160.87 | 0.595 | 9.81 | 1.1 | 1.38 | -- | -0.889 | -- | 0.609 | 23.7 | -- | -- | -- | -- |
| 164.3 | 0.6 | 9.8 | 1.13 | 1.38 | -- | -- | -- | 0.613 | 23.7 | -- | -- | -- | -- |
| 205.28 | 0.667 | 9.88 | 0.519 | -- | -2.2 | -- | -- | 0.138 | -- | 26.65 | 831 | -- | -- |
| 133.52 | 0.538 | 9.86 | -- | 1.2 | -2.16 | -- | -- | 0.348 | 24 | 22.38 | 696 | -- | -- |
| 284.65 | 0.788 | 9.77 | 1.17 | -- | -- | -- | -- | 0.629 | -- | -- | -- | -- | -- |
| 198.23 | 0.659 | 9.83 | -- | 1.4 | -- | -- | -- | 0.487 | 23.7 | -- | -- | -- | -- |
| 211.94 | 0.678 | 9.91 | -- | -- | -2.41 | -- | -- | 0.0379 | -- | 26.69 | 833 | -- | -- |
| 321.01 | 0.836 | 9.8 | -- | -- | -- | -- | -- | 0.499 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 2 | 110.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 4 | 110.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 10 | 110.81 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 13 | 111.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 44 | 112.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 46 | 112.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 56 | 112.72 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 97 | 113.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 170 | 114.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 171 | 114.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 176 | 114.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 191 | 114.91 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 200 | 114.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 214 | 115.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 221 | 115.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 243 | 115.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 311 | 115.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 14 |
| 314 | 115.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 316 | 115.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 349 | 115.60 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 361 | 115.64 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 423 | 115.95 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 430 | 115.96 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 436 | 116.00 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 440 | 116.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 488 | 116.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 490 | 116.33 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 18 |
| 494 | 116.36 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 510 | 116.45 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 17 |
| 514 | 116.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 520 | 116.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 521 | 116.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 526 | 116.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 532 | 116.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 565 | 116.74 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 596 | 116.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 638 | 116.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 13 |
| 641 | 116.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 681 | 117.13 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 718 | 117.23 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 21 |
| 726 | 117.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 758 | 117.35 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 865 | 117.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 976 | 118.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |