Os06g0202300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0202300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.4 | 0.648 | 8.72 | -0.571 | 0.926 | 3.24 | -0.888 | 2.3 | -3.46 | 13.5 | 0.9607 | 10057 | -- | -- |
| 190.06 | 0.642 | 8.77 | -0.876 | 1.14 | 2.94 | -1.08 | -- | -3.53 | 12.4 | 1.19 | 9875 | -- | -- |
| 189.54 | 0.641 | 8.73 | -0.567 | 1.12 | 3.36 | -- | 2.28 | -3.5 | 13.2 | 1.029 | 9924 | -- | -- |
| 193.54 | 0.648 | 8.77 | -1.03 | 1.17 | 3.03 | -- | -- | -3.6 | 12.4 | 1.19 | 9875 | -- | -- |
| 205.13 | 0.667 | 8.74 | -0.548 | -- | 3.44 | -- | 2.28 | -3.44 | -- | 1.259 | 11850 | -- | -- |
| 358.52 | 0.888 | 8.61 | -0.263 | 0.804 | -- | -1.06 | -- | -2.85 | 13.5 | -- | -- | -- | -- |
| 362.91 | 0.892 | 8.62 | -0.297 | 0.809 | -- | -- | -- | -2.86 | 13.7 | -- | -- | -- | -- |
| 203.01 | 0.664 | 8.76 | -1.13 | -- | 3.3 | -- | -- | -3.58 | -- | 1.38 | 11863 | -- | -- |
| 216.98 | 0.686 | 8.74 | -- | 1.22 | 2.84 | -- | -- | -3.47 | 12.2 | 1.49 | 9819 | -- | -- |
| 402.73 | 0.938 | 8.63 | -0.33 | -- | -- | -- | -- | -2.88 | -- | -- | -- | -- | -- |
| 365.24 | 0.894 | 8.61 | -- | 0.814 | -- | -- | -- | -2.82 | 13.7 | -- | -- | -- | -- |
| 227.86 | 0.703 | 8.74 | -- | -- | 3.05 | -- | -- | -3.41 | -- | 1.63 | 10412 | -- | -- |
| 405.6 | 0.94 | 8.62 | -- | -- | -- | -- | -- | -2.84 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 2 | 188.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 6 | 189.44 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 10 | 189.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 15 | 189.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 28 | 190.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 32 | 190.39 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 41 | 190.59 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 42 | 190.59 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 108 | 190.91 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 111 | 191.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 114 | 191.07 | radiation | 1 | 14400 | > th | dose independent | sin | 2 | NA |
| 133 | 191.30 | radiation | 1 | 14400 | < th | dose independent | sin | 2 | NA |
| 138 | 191.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 140 | 191.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 21 |
| 162 | 191.40 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 191 | 191.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 210 | 191.76 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 213 | 191.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 217 | 191.85 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 233 | 191.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 235 | 191.96 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 277 | 192.40 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 299 | 192.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 301 | 192.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 303 | 192.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 399 | 192.81 | wind | 7 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 410 | 192.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 535 | 193.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 607 | 194.73 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 630 | 194.91 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 671 | 195.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 672 | 195.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 680 | 195.29 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 702 | 195.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 21 |
| 717 | 195.48 | humidity | 70 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 728 | 195.62 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 775 | 196.00 | humidity | 60 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 781 | 196.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 785 | 196.14 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 794 | 196.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 796 | 196.35 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 19 |
| 797 | 196.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 15 |
| 820 | 196.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 19 |
| 823 | 196.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 869 | 196.74 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 870 | 196.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 15 |
| 919 | 196.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 931 | 197.08 | radiation | 1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 965 | 197.24 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 990 | 197.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 991 | 197.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 9 |
| 998 | 197.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 17 |