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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0201200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.22 (0.0513) R2 : 0.596
β1 : -0.763 (0.188) R2dD : 0.0146 R2D : -0.00341
β2 : 1.82 (0.165) R2dC : 0.199 R2C : 0.427
β3 : 1.97 (0.206) R2dE : 0.152 R2E : 0.374
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.364 (0.109) R2dN8 : 0.0126 R2N8 : 0.00318
σ : 0.958
deviance : 423.35
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_____
C
peak time of C : 23.6
E
wheather : humidity
threshold : 67.13
memory length : 671
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19
open length of G : 1.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
406.17 0.947 4.21 -0.988 1.86 1.87 -2.93 2.23 -0.355 23.8 68.01 665 19.1 0.933
413.39 0.947 4.23 -0.808 1.84 1.97 -1.6 -- -0.361 23.6 67.74 675 19.1 0.886
425.75 0.961 4.18 -0.807 1.92 1.89 -- 0.347 -0.299 23.5 68 669 19 1.08
423.35 0.958 4.22 -0.763 1.82 1.97 -- -- -0.364 23.6 67.13 671 19 1.05
458.15 0.997 4.26 -0.518 -- 3.36 -- -1.76 -0.596 -- 51.79 694 17.4 3.05
498.36 1.05 4.24 -0.688 2.9 -- -1.17 -- -0.357 0.0584 -- -- -- --
504.25 1.05 4.23 -0.641 2.9 -- -- -- -0.351 0.047 -- -- -- --
449.38 0.987 4.19 -0.647 -- 3.59 -- -- -0.422 -- 50.1 693 17.3 3.05
437.99 0.975 4.22 -- 1.8 1.99 -- -- -0.304 23.5 66.92 672 19 1.1
1033.94 1.5 4.17 -0.55 -- -- -- -- -0.31 -- -- -- -- --
515.08 1.06 4.22 -- 2.89 -- -- -- -0.28 0.0345 -- -- -- --
451.89 0.99 4.14 -- -- 3.36 -- -- -0.292 -- 39.38 729 16.8 2.97
1041.92 1.51 4.16 -- -- -- -- -- -0.249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 411.59 humidity 70 720 > th dose dependent rect. 19 1
2 411.68 humidity 60 720 > th dose dependent rect. 17 3
27 426.11 humidity 70 720 > th dose independent rect. 16 4
35 427.51 temperature 30 720 < th dose independent rect. 17 3
45 429.50 temperature 30 720 < th dose independent rect. 17 12
62 431.57 humidity 70 720 > th dose independent rect. 16 13
63 431.69 humidity 90 720 < th dose dependent rect. 15 10
74 432.58 humidity 80 720 < th dose independent rect. 14 8
76 432.69 humidity 80 720 > th dose independent rect. 11 11
93 433.60 humidity 90 720 < th dose dependent sin 14 NA
96 433.67 humidity 70 720 > th dose dependent rect. 10 12
122 434.96 humidity 90 720 < th dose dependent rect. 15 17
126 435.01 humidity 50 720 > th dose dependent rect. 17 11
130 435.13 humidity 70 720 > th dose independent rect. 18 10
134 435.24 humidity 70 720 > th dose dependent sin 19 NA
207 437.77 humidity 80 720 > th dose independent sin 19 NA
258 439.07 humidity 70 720 < th dose independent rect. 14 18
298 439.79 humidity 70 720 < th dose independent sin 13 NA
307 439.98 humidity 80 720 < th dose independent sin 18 NA
371 441.45 humidity 70 720 > th dose independent sin 13 NA
445 442.49 radiation 1 720 < th dose dependent rect. 12 7
449 442.50 radiation 1 720 < th dose dependent rect. 9 10
589 444.44 radiation 1 720 < th dose independent rect. 17 2
635 445.10 humidity 90 720 < th dose independent rect. 20 4
649 445.25 humidity 80 720 < th dose dependent rect. 19 2
686 445.62 humidity 80 720 > th dose independent rect. 3 19
812 446.62 humidity 80 1440 < th dose independent rect. 6 16