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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0200800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.91 (0.0461) R2 : 0.61
β1 : 4.09 (0.175) R2dD : 0.539 R2D : 0.211
β2 : 0.723 (0.108) R2dC : 0.0386 R2C : 0.000963
β3 : -2.65 (0.15) R2dE : 0.321 R2E : -0.0339
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.15 (0.103) R2dN8 : 0.16 R2N8 : -0.0838
σ : 0.849
deviance : 332.56
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_____
C
peak time of C : 0.752
E
wheather : temperature
threshold : 21.06
memory length : 1595
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
316.78 0.836 3.85 4.62 0.737 -2.73 1.81 1.49 1.29 0.437 21.08 1566 -- --
319.87 0.833 3.91 4.32 0.664 -2.75 1.88 -- 1.24 0.047 20.46 1610 -- --
330.49 0.847 3.85 4.56 0.724 -2.74 -- 1.58 1.28 0.6 21.17 1599 -- --
332.56 0.849 3.91 4.09 0.723 -2.65 -- -- 1.15 0.752 21.06 1595 -- --
362.49 0.887 3.84 4.62 -- -2.74 -- 1.68 1.3 -- 21.36 1638 -- --
547.92 1.1 4.05 3.2 0.661 -- 1.73 -- 0.537 0.4 -- -- -- --
560.34 1.11 4.05 3.13 0.666 -- -- -- 0.526 0.987 -- -- -- --
364.59 0.889 3.9 4.13 -- -2.67 -- -- 1.16 -- 20.86 1641 -- --
726.99 1.26 4.08 -- 0.984 -1.58 -- -- 0.466 1.42 22.2 1315 -- --
587.92 1.13 4.04 3.15 -- -- -- -- 0.539 -- -- -- -- --
818.54 1.34 4.13 -- 0.718 -- -- -- 0.177 1.17 -- -- -- --
733.75 1.27 4.05 -- -- -2.16 -- -- 0.488 -- 20.86 1641 -- --
850.47 1.36 4.12 -- -- -- -- -- 0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 307.94 wind 9.0 43200 > th dose dependent rect. 19 11
5 313.55 wind 9.0 43200 > th dose independent rect. 19 11
7 315.30 temperature 20.0 1440 > th dose dependent rect. 6 15
9 315.41 temperature 20.0 1440 > th dose dependent sin 20 NA
19 315.68 temperature 20.0 1440 > th dose dependent rect. 10 12
44 316.19 temperature 20.0 1440 > th dose dependent rect. 13 9
71 316.68 temperature 20.0 1440 > th dose dependent rect. 16 3
79 316.98 wind 9.0 43200 < th dose independent rect. 19 11
106 317.50 temperature 20.0 1440 > th dose dependent rect. 15 5
188 319.35 temperature 20.0 1440 > th dose dependent rect. 10 23
190 319.40 temperature 20.0 1440 > th dose dependent no NA NA
197 319.57 temperature 20.0 1440 > th dose dependent rect. 13 23
202 319.67 wind 9.0 43200 > th dose dependent rect. 19 6
224 319.89 precipitation 0.1 43200 < th dose independent rect. 17 1
226 319.89 precipitation 0.1 43200 < th dose dependent rect. 17 1
246 320.04 precipitation 0.1 43200 > th dose independent rect. 17 1
281 320.35 wind 9.0 43200 > th dose independent rect. 19 6
283 320.35 temperature 20.0 1440 > th dose dependent rect. 16 23
478 322.62 wind 9.0 43200 < th dose independent rect. 19 6
479 322.63 temperature 30.0 1440 < th dose dependent rect. 18 1
688 325.35 radiation 20.0 4320 < th dose independent rect. 15 17
724 325.70 wind 9.0 43200 > th dose independent rect. 19 3
894 327.28 wind 9.0 43200 < th dose independent rect. 19 2