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Os06g0199300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.3 (0.0213) R2 : 0.731
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.71 (0.052) R2dC : 0.637 R2C : 0.622
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.535 (0.0448) R2dN8 : 0.109 R2N8 : 0.0944
σ : 0.402
deviance : 73.75
__
_____
C
peak time of C : 2.15
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.27 0.359 15.3 -0.44 1.13 0.736 0.494 -0.277 0.537 3.44 3 2 -- --
58.18 0.355 15.3 -0.429 1.12 0.757 0.321 -- 0.513 3.77 13.48 12 -- --
58.74 0.357 15.3 -0.447 1.16 0.737 -- -0.0406 0.489 3.65 16.56 4 -- --
58.4 0.356 15.3 -0.449 1.11 0.78 -- -- 0.516 3.82 14 13 -- --
72.14 0.396 15.3 -0.448 -- 1.44 -- -0.0331 0.503 -- 6.693 278 -- --
67.79 0.386 15.3 -0.452 1.72 -- 0.308 -- 0.486 2.15 -- -- -- --
68.15 0.387 15.3 -0.461 1.72 -- -- -- 0.484 2.16 -- -- -- --
71.52 0.394 15.3 -0.392 -- 1.44 -- -- 0.538 -- 5.8 278 -- --
63.6 0.371 15.3 -- 1.11 0.781 -- -- 0.561 3.75 16.53 13 -- --
244.21 0.73 15.3 -0.389 -- -- -- -- 0.525 -- -- -- -- --
73.75 0.402 15.3 -- 1.71 -- -- -- 0.535 2.15 -- -- -- --
75.33 0.404 15.3 -- -- 1.42 -- -- 0.583 -- 4.21 273 -- --
248.2 0.735 15.3 -- -- -- -- -- 0.568 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.45 wind 9 43200 < th dose independent rect. 9 5
2 56.55 wind 9 43200 > th dose independent rect. 9 5
4 56.82 wind 9 43200 < th dose independent rect. 8 8
5 56.83 wind 9 43200 > th dose independent rect. 8 8
9 56.88 wind 9 43200 > th dose dependent rect. 10 8
13 56.96 radiation 20 43200 > th dose independent rect. 9 1
14 56.96 wind 9 43200 > th dose independent rect. 10 3
15 56.96 wind 7 43200 > th dose dependent rect. 10 4
41 57.07 wind 3 43200 < th dose dependent rect. 5 1
46 57.09 wind 9 43200 < th dose independent sin 1 NA
47 57.09 wind 9 43200 < th dose independent rect. 21 21
48 57.10 wind 9 43200 > th dose independent sin 0 NA
52 57.11 wind 9 43200 > th dose independent rect. 20 21
64 57.13 wind 9 43200 < th dose independent rect. 1 17
96 57.20 wind 3 43200 > th dose independent rect. 1 14
107 57.21 wind 9 43200 < th dose dependent rect. 5 2
113 57.23 wind 3 43200 < th dose independent rect. 1 14
115 57.24 wind 9 43200 < th dose independent rect. 10 3
117 57.24 wind 3 43200 > th dose independent rect. 5 9
119 57.24 wind 3 43200 < th dose independent rect. 4 10
131 57.26 wind 9 43200 > th dose dependent rect. 10 12
136 57.28 wind 9 43200 > th dose independent rect. 7 17
146 57.29 wind 9 43200 < th dose independent rect. 7 19
149 57.29 wind 5 43200 < th dose dependent rect. 20 12
150 57.29 wind 9 43200 < th dose dependent rect. 22 17
156 57.30 wind 9 43200 < th dose independent rect. 7 17
189 57.31 wind 5 43200 < th dose dependent rect. 22 17
197 57.32 wind 9 43200 > th dose independent rect. 10 23
202 57.32 wind 5 43200 < th dose dependent rect. 4 10
219 57.33 wind 9 43200 > th dose independent rect. 17 23
221 57.33 wind 9 43200 < th dose independent rect. 15 23
223 57.33 wind 5 43200 < th dose dependent rect. 1 14
244 57.34 wind 9 43200 < th dose dependent rect. 18 14
283 57.36 wind 9 43200 < th dose independent rect. 10 23
284 57.36 wind 9 43200 < th dose independent rect. 17 23
285 57.36 wind 7 43200 > th dose dependent rect. 8 8
292 57.37 wind 9 43200 > th dose independent no NA NA
307 57.37 wind 5 43200 < th dose dependent rect. 3 12
308 57.37 wind 9 43200 < th dose dependent rect. 1 14
310 57.37 wind 1 43200 > th dose dependent rect. 22 17
313 57.38 wind 9 43200 < th dose independent no NA NA
327 57.38 wind 9 43200 > th dose independent rect. 15 23
328 57.38 wind 9 43200 < th dose independent rect. 1 23
332 57.38 wind 1 43200 > th dose dependent rect. 5 1
337 57.38 wind 9 43200 < th dose dependent rect. 4 11
350 57.39 wind 9 43200 < th dose independent rect. 23 23
353 57.39 wind 1 43200 > th dose dependent rect. 4 11
357 57.39 wind 1 43200 > th dose dependent rect. 1 14
396 57.41 wind 9 43200 < th dose dependent sin 10 NA
403 57.41 wind 1 43200 > th dose dependent rect. 18 14
464 57.46 wind 1 43200 > th dose dependent rect. 5 9
487 57.48 wind 9 43200 < th dose dependent sin 4 NA
495 57.49 wind 9 43200 < th dose independent rect. 13 23
508 57.50 wind 3 43200 > th dose independent sin 4 NA
524 57.51 wind 3 43200 < th dose independent sin 4 NA
547 57.52 wind 1 43200 > th dose dependent sin 4 NA
558 57.53 wind 1 43200 > th dose dependent sin 10 NA
559 57.53 wind 5 43200 < th dose dependent sin 4 NA
573 57.54 wind 7 43200 > th dose dependent sin 1 NA
623 57.57 wind 9 43200 > th dose dependent sin 19 NA
660 57.59 wind 1 43200 > th dose dependent rect. 18 20
679 57.60 wind 7 43200 > th dose dependent rect. 21 21
717 57.62 radiation 20 10 < th dose dependent rect. 17 23
744 57.64 wind 7 43200 > th dose dependent rect. 15 23
789 57.67 temperature 20 14400 < th dose independent rect. 21 1
800 57.68 temperature 20 14400 > th dose independent rect. 21 1
949 57.75 wind 7 43200 > th dose dependent rect. 4 20
964 57.76 wind 7 43200 > th dose dependent rect. 6 18