Os06g0199000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine-rich cell wall structural protein 2 precursor.
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Os06g0199000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine-rich cell wall structural protein 2 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.1 | 0.613 | 2.84 | -0.0458 | 0.171 | 3.03 | -0.149 | -13.9 | -0.0345 | 22.2 | 88.94 | 29 | 3.11 | 3.02 |
| 200.5 | 0.665 | 2.84 | -0.102 | 0.159 | 1.46 | -0.249 | -- | -0.0626 | 0.00432 | 88.94 | 29 | 3.11 | 3.02 |
| 170.18 | 0.608 | 2.84 | -0.0398 | 0.172 | 3.02 | -- | -13.8 | -0.0342 | 22.2 | 88.96 | 28 | 3.11 | 3.02 |
| 200.52 | 0.664 | 2.84 | -0.0839 | 0.171 | 1.44 | -- | -- | -0.0701 | 22.4 | 90.66 | 24 | 3.19 | 3.3 |
| 171.97 | 0.611 | 2.83 | -0.0374 | -- | 3.02 | -- | -13.9 | -0.0337 | -- | 88.87 | 29 | 3.13 | 3.01 |
| 206.13 | 0.673 | 2.84 | -0.102 | 0.161 | -- | -0.359 | -- | -0.0781 | 1.23 | -- | -- | -- | -- |
| 206.48 | 0.673 | 2.84 | -0.0887 | 0.169 | -- | -- | -- | -0.075 | 23.9 | -- | -- | -- | -- |
| 202.29 | 0.665 | 2.83 | -0.0813 | -- | 1.42 | -- | -- | -0.0691 | -- | 90.57 | 24 | 3.19 | 3.32 |
| 200.71 | 0.663 | 2.84 | -- | 0.17 | 1.44 | -- | -- | -0.0608 | 22.4 | 90.66 | 24 | 3.19 | 3.3 |
| 208.28 | 0.674 | 2.83 | -0.0836 | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
| 206.69 | 0.673 | 2.84 | -- | 0.168 | -- | -- | -- | -0.0652 | 23.8 | -- | -- | -- | -- |
| 202.46 | 0.665 | 2.83 | -- | -- | 1.42 | -- | -- | -0.0601 | -- | 90.57 | 24 | 3.19 | 3.32 |
| 208.46 | 0.674 | 2.83 | -- | -- | -- | -- | -- | -0.0635 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.68 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 3 | 3 |
| 5 | 172.47 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 6 | 172.48 | humidity | 80.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 7 | 172.72 | humidity | 80.0 | 270 | < th | dose independent | rect. | 2 | 2 |
| 9 | 172.72 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 2 | 2 |
| 13 | 172.74 | humidity | 80.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 38 | 179.00 | humidity | 80.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 95 | 179.83 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 105 | 179.83 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 128 | 181.92 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 129 | 182.10 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 137 | 184.09 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 17 | 13 |
| 187 | 187.28 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 192 | 187.78 | temperature | 20.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 195 | 187.91 | temperature | 20.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 200 | 188.32 | temperature | 20.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 223 | 188.79 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 256 | 189.82 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 263 | 190.06 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 270 | 190.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 275 | 190.23 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 3 |
| 333 | 190.58 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 353 | 191.38 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 467 | 193.79 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 474 | 193.79 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 532 | 194.17 | wind | 5.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 572 | 194.62 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 579 | 194.67 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 583 | 194.70 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 595 | 194.77 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 597 | 194.82 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 600 | 194.83 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 601 | 194.84 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 602 | 194.87 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 603 | 194.87 | radiation | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 605 | 194.88 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 606 | 194.88 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 609 | 194.88 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 611 | 194.88 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 612 | 194.88 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 614 | 194.88 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 618 | 194.93 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 636 | 195.14 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 652 | 195.40 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 16 |
| 665 | 195.55 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 669 | 195.55 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 672 | 195.55 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 688 | 195.58 | wind | 9.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 689 | 195.58 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 710 | 195.82 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 712 | 195.87 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 722 | 195.94 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 734 | 196.02 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 4 |
| 736 | 196.03 | wind | 9.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 737 | 196.06 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 738 | 196.07 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 754 | 196.20 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 756 | 196.21 | radiation | 40.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 777 | 196.36 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 18 |
| 783 | 196.40 | humidity | 80.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 805 | 196.50 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 12 |
| 846 | 196.69 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 849 | 196.73 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 930 | 197.16 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 990 | 197.53 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 17 |