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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0198000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0292) R2 : 0.277
β1 : -0.855 (0.11) R2dD : 0.109 R2D : 0.0753
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.08 (0.14) R2dE : 0.111 R2E : 0.0892
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.309 (0.065) R2dN8 : 0.0537 R2N8 : 0.104
σ : 0.538
deviance : 133.41
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.87
memory length : 60
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.6 0.531 11.7 -0.796 0.217 -1.22 1.09 -0.488 0.296 2.28 24.18 40 -- --
127.85 0.531 11.8 -0.859 0.217 -1.16 0.937 -- 0.283 2.33 24.2 39 -- --
130.81 0.537 11.8 -0.932 0.218 -1.12 -- 0.362 0.269 2.83 24.2 40 -- --
130.99 0.533 11.8 -0.89 0.22 -1.17 -- -- 0.277 3.03 24.18 40 -- --
133.22 0.538 11.8 -0.904 -- -1.02 -- 0.38 0.295 -- 24.07 42 -- --
147.5 0.569 11.7 -0.59 0.016 -- 0.936 -- 0.479 2.01 -- -- -- --
150.31 0.574 11.7 -0.62 0.103 -- -- -- 0.472 7.07 -- -- -- --
133.41 0.538 11.8 -0.855 -- -1.08 -- -- 0.309 -- 23.87 60 -- --
149.83 0.573 11.7 -- 0.155 -0.821 -- -- 0.427 3.4 24.1 54 -- --
150.86 0.574 11.7 -0.618 -- -- -- -- 0.474 -- -- -- -- --
160.42 0.592 11.7 -- 0.0966 -- -- -- 0.541 7.47 -- -- -- --
150.85 0.574 11.7 -- -- -0.812 -- -- 0.452 -- 23.2 40 -- --
160.92 0.592 11.7 -- -- -- -- -- 0.542 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.15 humidity 50 4320 < th dose independent rect. 12 1
4 127.40 temperature 25 90 < th dose dependent rect. 10 21
5 127.46 temperature 25 10 < th dose dependent rect. 10 22
25 127.77 temperature 25 10 < th dose dependent rect. 5 23
26 127.79 temperature 25 10 < th dose dependent rect. 23 23
28 127.82 temperature 25 10 < th dose dependent rect. 15 23
29 127.84 temperature 25 10 < th dose dependent no NA NA
32 127.86 wind 1 1440 < th dose dependent rect. 21 1
34 127.87 temperature 25 10 < th dose dependent rect. 21 23
36 127.88 temperature 25 10 < th dose dependent rect. 13 23
37 127.88 temperature 25 10 < th dose dependent rect. 17 23
53 127.99 temperature 25 10 < th dose dependent rect. 3 23
58 128.01 temperature 25 10 < th dose dependent rect. 19 23
61 128.04 temperature 25 30 < th dose dependent rect. 1 23
92 128.63 wind 1 720 < th dose dependent rect. 24 2
159 129.67 atmosphere 1015 43200 > th dose independent rect. 23 1
165 129.72 atmosphere 1015 43200 < th dose independent rect. 23 1
197 130.01 temperature 25 720 < th dose dependent rect. 7 17
235 130.20 atmosphere 1015 43200 > th dose independent rect. 21 7
269 130.27 temperature 15 1440 > th dose dependent rect. 21 1
278 130.29 temperature 30 1440 < th dose dependent rect. 21 1
323 130.41 temperature 25 90 < th dose dependent rect. 13 18
359 130.45 atmosphere 1015 43200 > th dose independent sin 11 NA
360 130.45 atmosphere 1015 43200 > th dose independent rect. 3 1
370 130.46 atmosphere 1015 43200 < th dose independent sin 10 NA
442 130.54 atmosphere 1015 43200 < th dose independent rect. 3 3
675 130.71 atmosphere 1015 43200 > th dose dependent rect. 21 9
892 130.87 temperature 25 1440 < th dose dependent rect. 16 20
903 130.88 atmosphere 1015 43200 < th dose independent rect. 10 23
912 130.89 atmosphere 1015 43200 > th dose independent no NA NA
929 130.90 atmosphere 1015 43200 < th dose independent no NA NA
936 130.90 atmosphere 1015 43200 > th dose independent rect. 2 23
938 130.90 atmosphere 1015 43200 > th dose independent rect. 7 23
958 130.91 atmosphere 1015 43200 > th dose independent rect. 5 23
960 130.91 atmosphere 1015 43200 < th dose independent rect. 7 23
977 130.92 atmosphere 1015 43200 < th dose independent rect. 2 23
979 130.92 atmosphere 1015 43200 < th dose independent rect. 5 23