FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0197200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0171) R2 : 0.00135
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0283 (0.036) R2dN8 : 0.00175 R2N8 : 0.00135
σ : 0.322
deviance : 47.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.03 0.315 3.01 0.217 0.217 -0.122 -1.04 1.05 0.0638 10.6 0.06 85 -- --
46.11 0.319 3.01 0.149 0.248 -0.141 0.141 -- 0.0464 11 0.5199 18 -- --
46.04 0.316 3 0.136 0.123 -0.0981 -- 0.748 0.0861 11.4 10.08 631 -- --
46.17 0.316 3.01 0.155 0.248 -0.141 -- -- 0.0467 10.9 0.5599 10 -- --
46.16 0.316 3.01 0.191 -- -0.0833 -- 0.83 0.0789 -- 10.3 631 -- --
46.33 0.319 3.02 0.142 0.0379 -- -0.535 -- 0.0409 5.09 -- -- -- --
46.64 0.32 3.02 0.145 0.0909 -- -- -- 0.044 9.42 -- -- -- --
46.64 0.319 3.02 0.139 -- 0.0696 -- -- 0.0464 -- 10.3 631 -- --
46.8 0.319 3.02 -- 0.25 -0.144 -- -- 0.0305 10.8 0.6 8 -- --
47.12 0.321 3.02 0.144 -- -- -- -- 0.0443 -- -- -- -- --
47.19 0.321 3.02 -- 0.0908 -- -- -- 0.0279 9.3 -- -- -- --
47.07 0.32 3.02 -- -- 0.0805 -- -- 0.0299 -- 12.37 5 -- --
47.67 0.322 3.02 -- -- -- -- -- 0.0283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.00 temperature 25.0 270 > th dose independent rect. 1 1
4 42.18 atmosphere 1000.0 30 > th dose independent rect. 2 1
5 42.18 atmosphere 995.0 30 > th dose dependent rect. 2 1
6 42.18 temperature 25.0 90 > th dose dependent rect. 2 2
7 42.23 wind 7.0 30 < th dose dependent rect. 2 1
9 42.25 wind 5.0 30 < th dose independent rect. 2 1
11 42.25 temperature 25.0 30 < th dose independent rect. 2 1
12 42.25 humidity 80.0 30 > th dose independent rect. 2 1
14 42.26 temperature 10.0 30 > th dose independent rect. 2 1
17 42.26 humidity 50.0 30 > th dose independent rect. 2 1
21 42.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
23 42.26 radiation 1.0 30 < th dose independent rect. 2 1
28 42.26 precipitation 0.1 30 < th dose independent rect. 2 1
29 42.26 temperature 10.0 30 > th dose independent rect. 3 23
30 42.26 humidity 50.0 30 > th dose dependent rect. 2 1
31 42.26 radiation 1.0 30 < th dose dependent rect. 2 1
36 42.26 precipitation 0.1 30 < th dose dependent rect. 2 1
42 42.32 temperature 10.0 30 > th dose dependent rect. 2 1
43 42.33 temperature 25.0 90 > th dose dependent rect. 1 4
45 42.35 atmosphere 1005.0 30 > th dose dependent rect. 2 1
51 42.41 wind 3.0 30 < th dose dependent rect. 2 1
55 42.44 atmosphere 1015.0 30 < th dose dependent rect. 2 1
56 42.46 temperature 30.0 30 < th dose dependent rect. 2 1
63 42.61 atmosphere 1005.0 30 > th dose dependent rect. 2 3
64 42.62 wind 1.0 30 > th dose independent rect. 2 1
82 42.88 radiation 1.0 43200 < th dose dependent rect. 3 1
84 42.89 radiation 1.0 4320 < th dose dependent rect. 3 1
94 42.95 wind 9.0 1440 < th dose independent rect. 3 1
95 42.95 temperature 10.0 1440 > th dose independent rect. 3 1
98 42.95 temperature 30.0 1440 < th dose independent rect. 3 1
102 42.95 humidity 50.0 1440 > th dose independent rect. 3 1
111 42.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
112 42.95 radiation 1.0 1440 < th dose independent rect. 3 1
132 42.95 temperature 10.0 1440 > th dose independent rect. 4 23
184 43.27 wind 1.0 30 < th dose independent rect. 10 1
185 43.27 temperature 10.0 1440 > th dose independent rect. 11 1
189 43.27 atmosphere 995.0 1440 > th dose independent rect. 11 1
192 43.27 precipitation 0.1 1440 < th dose independent rect. 11 1
193 43.27 temperature 10.0 1440 > th dose independent rect. 12 23
196 43.27 wind 1.0 30 < th dose dependent rect. 10 1
197 43.27 precipitation 0.1 1440 < th dose dependent rect. 11 1
201 43.38 wind 9.0 30 < th dose independent rect. 3 23
204 43.43 humidity 70.0 30 < th dose independent rect. 10 1
209 43.49 atmosphere 995.0 30 > th dose independent rect. 3 23
210 43.49 temperature 25.0 30 > th dose dependent rect. 10 1
217 43.53 humidity 80.0 30 < th dose dependent rect. 10 1
219 43.54 radiation 40.0 30 < th dose independent rect. 10 1
224 43.58 atmosphere 1010.0 30 < th dose independent rect. 10 1
227 43.59 temperature 30.0 14400 > th dose dependent rect. 8 1
242 43.61 temperature 25.0 30 > th dose independent rect. 10 1
248 43.63 atmosphere 1000.0 30 > th dose dependent rect. 10 1
252 43.64 temperature 30.0 30 < th dose independent rect. 10 1
253 43.64 atmosphere 1005.0 30 > th dose independent rect. 10 1
261 43.66 precipitation 0.1 30 < th dose independent rect. 3 23
263 43.66 precipitation 0.1 30 < th dose dependent rect. 3 23
266 43.68 radiation 20.0 30 > th dose independent rect. 10 1
269 43.68 wind 5.0 30 < th dose dependent rect. 10 1
277 43.70 atmosphere 1005.0 30 > th dose independent rect. 2 3
279 43.71 radiation 40.0 30 < th dose dependent rect. 10 1
284 43.72 temperature 10.0 30 > th dose independent rect. 10 1
286 43.72 humidity 50.0 30 > th dose independent rect. 10 1
292 43.72 precipitation 0.1 30 < th dose independent rect. 10 1
294 43.72 temperature 10.0 30 > th dose independent rect. 11 23
295 43.72 precipitation 0.1 30 < th dose dependent rect. 10 1
298 43.74 wind 1.0 30 > th dose independent rect. 10 1
305 43.79 temperature 30.0 14400 > th dose independent rect. 8 1
324 43.85 radiation 1.0 30 > th dose dependent rect. 10 1
326 43.86 wind 3.0 30 < th dose dependent rect. 2 3
332 43.91 temperature 30.0 14400 < th dose independent rect. 6 3
334 43.91 temperature 30.0 14400 < th dose independent rect. 19 14
336 43.92 temperature 30.0 14400 < th dose independent rect. 24 9
354 43.99 atmosphere 1015.0 30 < th dose dependent rect. 10 1
361 44.05 wind 1.0 30 > th dose dependent rect. 10 1
362 44.06 temperature 25.0 270 > th dose independent rect. 23 9
364 44.07 humidity 50.0 30 > th dose dependent rect. 10 1
369 44.11 wind 3.0 30 < th dose dependent rect. 2 14
374 44.15 wind 3.0 30 < th dose dependent rect. 2 12
380 44.18 humidity 90.0 10 < th dose independent rect. 4 1
385 44.20 wind 3.0 30 < th dose independent rect. 2 3
393 44.23 wind 9.0 30 < th dose independent rect. 11 23
417 44.25 wind 3.0 30 < th dose dependent rect. 2 10
463 44.35 temperature 25.0 270 < th dose independent rect. 21 12
469 44.36 humidity 50.0 10 > th dose independent rect. 2 12
482 44.40 wind 1.0 30 > th dose independent rect. 4 1
488 44.43 temperature 20.0 10 > th dose independent rect. 2 3
489 44.44 humidity 60.0 30 > th dose independent rect. 14 12
498 44.46 temperature 25.0 10 > th dose independent rect. 4 1
506 44.47 wind 9.0 1440 < th dose independent rect. 3 3
507 44.47 temperature 10.0 1440 > th dose independent rect. 3 3
510 44.47 temperature 30.0 1440 < th dose independent rect. 3 3
514 44.47 humidity 50.0 1440 > th dose independent rect. 3 3
523 44.47 atmosphere 995.0 1440 > th dose independent rect. 3 3
524 44.47 radiation 20.0 1440 < th dose independent rect. 3 3
533 44.47 precipitation 0.1 30 < th dose independent rect. 2 3
535 44.47 temperature 10.0 1440 > th dose independent rect. 6 21
538 44.47 precipitation 0.1 30 < th dose dependent rect. 2 3
555 44.48 temperature 25.0 90 > th dose dependent rect. 4 1
559 44.49 atmosphere 1005.0 10 > th dose dependent rect. 4 1
567 44.51 temperature 10.0 30 > th dose independent rect. 2 3
569 44.51 temperature 30.0 30 < th dose independent rect. 2 3
570 44.51 humidity 50.0 30 > th dose independent rect. 2 3
574 44.51 atmosphere 995.0 30 > th dose independent rect. 2 3
575 44.51 atmosphere 1010.0 30 < th dose independent rect. 2 3
577 44.51 radiation 1.0 30 < th dose independent rect. 2 3
582 44.51 temperature 10.0 30 > th dose independent rect. 5 21
583 44.51 wind 1.0 30 > th dose dependent rect. 4 1
585 44.51 radiation 20.0 30 < th dose dependent rect. 2 3
592 44.52 humidity 50.0 10 > th dose independent rect. 2 14
593 44.52 precipitation 0.1 30 < th dose independent rect. 5 21
594 44.52 temperature 10.0 720 > th dose dependent rect. 14 1
598 44.52 wind 3.0 30 < th dose dependent rect. 2 6
599 44.52 precipitation 0.1 30 < th dose dependent rect. 5 21
600 44.53 humidity 90.0 90 < th dose independent rect. 2 1
610 44.54 atmosphere 1000.0 30 > th dose independent rect. 5 21
613 44.54 radiation 1.0 30 < th dose dependent rect. 2 12
618 44.56 temperature 25.0 1440 < th dose independent rect. 1 1
644 44.57 radiation 1.0 10 < th dose independent rect. 2 12
649 44.57 radiation 1.0 30 > th dose independent rect. 11 23
666 44.58 wind 1.0 10 > th dose independent rect. 5 23
668 44.59 wind 9.0 30 < th dose independent rect. 5 21
673 44.60 radiation 40.0 30 < th dose independent rect. 14 12
674 44.60 wind 1.0 30 > th dose independent rect. 5 21
701 44.63 wind 3.0 30 < th dose dependent rect. 2 21
706 44.64 temperature 30.0 30 < th dose independent rect. 2 12
716 44.65 radiation 1.0 30 < th dose dependent rect. 2 10
722 44.66 radiation 1.0 30 < th dose dependent rect. 2 6
726 44.67 temperature 25.0 270 < th dose independent sin 9 NA
729 44.67 wind 1.0 10 > th dose independent rect. 11 23
732 44.67 radiation 40.0 10 < th dose dependent rect. 14 12
738 44.68 radiation 1.0 10 < th dose independent rect. 2 6
750 44.68 atmosphere 1000.0 30 > th dose independent rect. 2 12
769 44.69 radiation 10.0 10 < th dose independent rect. 16 10
773 44.69 wind 9.0 14400 > th dose dependent rect. 13 1
813 44.71 radiation 1.0 90 < th dose dependent rect. 1 23
816 44.72 radiation 1.0 720 > th dose independent rect. 14 1
819 44.72 wind 9.0 10 < th dose independent rect. 14 12
821 44.72 atmosphere 1000.0 10 > th dose independent rect. 2 14
843 44.73 wind 9.0 10 < th dose independent rect. 16 10
847 44.73 humidity 50.0 30 > th dose dependent rect. 2 3
851 44.73 wind 9.0 10 < th dose dependent rect. 2 12
853 44.74 temperature 25.0 270 > th dose independent sin 8 NA
857 44.74 temperature 30.0 30 < th dose independent rect. 14 12
866 44.75 wind 9.0 30 < th dose independent rect. 2 12
868 44.75 precipitation 0.1 30 < th dose independent rect. 2 12
875 44.75 precipitation 0.1 30 < th dose dependent rect. 2 12
879 44.76 temperature 10.0 720 > th dose independent rect. 14 1
885 44.76 atmosphere 1015.0 720 < th dose independent rect. 14 1
891 44.76 precipitation 0.1 720 < th dose independent rect. 2 1
892 44.76 precipitation 0.1 10 < th dose independent rect. 16 10
894 44.76 temperature 10.0 10 > th dose independent rect. 2 12
898 44.76 temperature 10.0 1440 > th dose independent rect. 3 12
901 44.76 temperature 10.0 10 > th dose independent rect. 14 12
903 44.76 temperature 10.0 1440 > th dose independent rect. 15 12
909 44.76 atmosphere 1015.0 10 < th dose independent rect. 2 12
911 44.76 temperature 30.0 30 < th dose independent rect. 2 14
915 44.76 temperature 10.0 720 > th dose independent rect. 15 23
921 44.76 precipitation 0.1 720 < th dose dependent rect. 2 1
923 44.76 precipitation 0.1 10 < th dose dependent rect. 16 10
927 44.77 precipitation 0.1 720 < th dose independent rect. 14 1
933 44.77 precipitation 0.1 10 < th dose independent rect. 14 12
934 44.77 precipitation 0.1 10 < th dose independent rect. 2 14
935 44.77 precipitation 0.1 720 < th dose dependent rect. 14 1
940 44.77 precipitation 0.1 10 < th dose dependent rect. 14 12
941 44.77 precipitation 0.1 10 < th dose dependent rect. 2 14
950 44.78 temperature 10.0 10 > th dose independent rect. 16 10
958 44.78 temperature 10.0 10 > th dose independent rect. 2 14
961 44.78 atmosphere 1015.0 10 < th dose independent rect. 2 14
964 44.78 atmosphere 995.0 720 > th dose independent rect. 15 23
968 44.78 temperature 10.0 30 > th dose dependent rect. 5 21
970 44.79 wind 9.0 720 < th dose independent rect. 14 1
989 44.80 temperature 25.0 10 > th dose independent rect. 9 3
990 44.80 humidity 90.0 90 < th dose independent rect. 2 3
992 44.80 temperature 30.0 10 < th dose independent rect. 16 10