Os06g0196700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 1.
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Os06g0196700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.1 | 0.415 | 7.3 | 1.67 | 1.22 | -0.635 | 0.603 | 6.81 | 0.177 | 6.54 | 25.68 | 3692 | -- | -- |
| 87.73 | 0.44 | 7.49 | 0.159 | 1.3 | 0.236 | 0.544 | -- | -0.138 | 6.35 | 25.68 | 3692 | -- | -- |
| 78.48 | 0.413 | 7.28 | 1.9 | 1.21 | -0.677 | -- | 6.75 | 0.193 | 6.48 | 26.4 | 2930 | -- | -- |
| 87.73 | 0.436 | 7.5 | -0.0748 | 1.26 | 0.239 | -- | -- | -0.165 | 6.56 | 34.71 | 47520 | -- | -- |
| 153.47 | 0.577 | 7.23 | 2.53 | -- | -0.925 | -- | 9.36 | 0.321 | -- | 26.79 | 2870 | -- | -- |
| 88.56 | 0.441 | 7.49 | 0.193 | 1.25 | -- | 0.5 | -- | -0.127 | 6.56 | -- | -- | -- | -- |
| 89.18 | 0.442 | 7.49 | 0.199 | 1.26 | -- | -- | -- | -0.128 | 6.53 | -- | -- | -- | -- |
| 162.26 | 0.596 | 7.49 | 0.374 | -- | -0.788 | -- | -- | 0.00242 | -- | 11.74 | 39441 | -- | -- |
| 87.77 | 0.436 | 7.5 | -- | 1.26 | 0.212 | -- | -- | -0.151 | 6.53 | 34.79 | 47520 | -- | -- |
| 171.22 | 0.611 | 7.52 | 0.23 | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
| 90.23 | 0.444 | 7.5 | -- | 1.26 | -- | -- | -- | -0.151 | 6.52 | -- | -- | -- | -- |
| 165.74 | 0.602 | 7.5 | -- | -- | -0.671 | -- | -- | -0.0523 | -- | 11.74 | 39441 | -- | -- |
| 172.62 | 0.613 | 7.52 | -- | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.83 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 2 | 75.47 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 3 | 75.62 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 5 | 75.78 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 7 | 75.96 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 8 | 76.05 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 9 | 76.06 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 19 |
| 13 | 76.25 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 47 | 77.47 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 50 | 77.56 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 52 | 77.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 76 | 77.91 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 77 | 77.91 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 80 | 77.95 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 95 | 77.96 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 96 | 78.02 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 98 | 78.03 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 100 | 78.05 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 105 | 78.15 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 116 | 78.23 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 4 |
| 126 | 78.30 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 129 | 78.32 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 130 | 78.33 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 138 | 78.35 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 146 | 78.37 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 151 | 78.40 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 218 | 78.70 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 221 | 78.73 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 228 | 78.78 | temperature | 25.0 | 720 | < th | dose independent | sin | 14 | NA |
| 230 | 78.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 236 | 78.81 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 238 | 78.82 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 242 | 78.84 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 265 | 78.90 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 18 |
| 271 | 78.91 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 13 |
| 283 | 78.94 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 284 | 78.94 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 298 | 78.96 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 311 | 78.98 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 18 |
| 374 | 79.06 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 384 | 79.07 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 385 | 79.07 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 391 | 79.08 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 409 | 79.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 457 | 79.15 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 21 |
| 467 | 79.16 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 16 | NA |
| 476 | 79.17 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 496 | 79.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 501 | 79.19 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 504 | 79.20 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 521 | 79.20 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 542 | 79.26 | temperature | 25.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 546 | 79.27 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 553 | 79.28 | wind | 1.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 562 | 79.29 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 570 | 79.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 589 | 79.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 611 | 79.33 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 618 | 79.34 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 17 |
| 667 | 79.40 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 694 | 79.43 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 701 | 79.44 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 709 | 79.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 21 |
| 714 | 79.44 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 22 |
| 718 | 79.45 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 765 | 79.47 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 22 |
| 783 | 79.48 | wind | 1.0 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 788 | 79.48 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 797 | 79.48 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 20 |
| 840 | 79.49 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 842 | 79.50 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 843 | 79.50 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 958 | 79.54 | radiation | 10.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 994 | 79.55 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 12 |