FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0195800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.61 (0.0592) R2 : 0.343
β1 : 0.465 (0.236) R2dD : 0.00733 R2D : 0.00827
β2 : 1.89 (0.167) R2dC : 0.232 R2C : -0.0196
β3 : 2.7 (0.22) R2dE : 0.288 R2E : 0.0538
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.59 (0.985) R2dD*E : 0.0403 R2D*E : 0.0224
γ1 : -0.557 (0.129) R2dN8 : 0.0399 R2N8 : 0.00787
σ : 1.07
deviance : 531.35
__
_____
C
peak time of C : 6.63
E
wheather : temperature
threshold : 15.3
memory length : 9
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.95
open length of G : 20.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
524.47 1.08 4.6 0.49 1.91 2.72 1.73 5.19 -0.532 6.73 14.77 10 5.95 20.1
553.61 1.1 4.68 -0.0216 1.89 2.89 1.14 -- -0.715 6.87 14.6 20 5.82 20.9
531.35 1.07 4.61 0.465 1.89 2.7 -- 4.59 -0.557 6.63 15.3 9 5.95 20.4
555.77 1.1 4.68 -0.0167 1.88 2.87 -- -- -0.734 6.68 14.82 18 5.85 20.9
667.69 1.21 4.64 0.614 -- 1.99 -- 4.22 -0.45 -- 15.95 9 5.85 22.2
649.26 1.19 4.61 0.36 1.4 -- 2.45 -- -0.331 10.5 -- -- -- --
672.68 1.21 4.6 0.453 1.4 -- -- -- -0.328 10.1 -- -- -- --
684.42 1.22 4.7 0.0767 -- 2.07 -- -- -0.618 -- 17.92 7 5.77 22.2
555.77 1.1 4.68 -- 1.88 2.87 -- -- -0.729 6.67 14.77 18 5.85 20.9
791.67 1.31 4.64 0.434 -- -- -- -- -0.33 -- -- -- -- --
678.1 1.22 4.61 -- 1.4 -- -- -- -0.378 10.1 -- -- -- --
684.57 1.22 4.7 -- -- 2.08 -- -- -0.628 -- 17.9 7 5.8 22.2
796.64 1.32 4.65 -- -- -- -- -- -0.378 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 528.56 temperature 15.0 10 > th dose dependent rect. 6 20
2 528.95 wind 9.0 4320 < th dose independent rect. 17 4
3 530.57 wind 9.0 4320 < th dose independent rect. 17 8
7 531.12 precipitation 0.1 14400 > th dose independent rect. 17 1
10 531.33 wind 9.0 4320 > th dose independent rect. 17 4
22 536.01 wind 7.0 4320 > th dose dependent rect. 17 4
23 536.32 precipitation 0.1 14400 < th dose independent rect. 17 1
24 536.32 precipitation 0.1 14400 < th dose dependent rect. 17 1
31 537.90 humidity 80.0 14400 > th dose dependent rect. 14 1
36 538.59 humidity 80.0 14400 > th dose independent rect. 15 1
50 540.52 wind 7.0 4320 > th dose dependent rect. 17 8
59 541.19 humidity 70.0 720 > th dose dependent rect. 15 17
61 541.46 temperature 15.0 30 > th dose dependent rect. 6 12
97 544.90 temperature 15.0 10 > th dose dependent sin 2 NA
98 544.90 temperature 30.0 10 < th dose dependent rect. 2 15
111 545.60 temperature 15.0 10 > th dose dependent rect. 6 18
124 546.52 temperature 30.0 10 < th dose dependent rect. 2 13
136 547.25 wind 5.0 43200 < th dose dependent rect. 24 4
159 548.26 precipitation 0.1 14400 > th dose dependent rect. 17 1
170 548.67 wind 1.0 43200 > th dose dependent rect. 23 5
180 549.21 humidity 50.0 720 > th dose dependent rect. 19 6
196 549.64 temperature 30.0 10 < th dose dependent sin 2 NA
213 550.10 humidity 60.0 720 > th dose dependent sin 12 NA
216 550.18 humidity 90.0 720 < th dose dependent rect. 17 14
240 551.03 wind 5.0 4320 > th dose dependent rect. 20 1
249 551.38 temperature 20.0 10 > th dose dependent rect. 6 10
251 551.39 wind 7.0 4320 > th dose dependent rect. 17 1
308 553.54 humidity 80.0 14400 < th dose independent rect. 15 1
321 553.90 temperature 30.0 10 < th dose dependent rect. 2 17
326 554.16 wind 3.0 43200 < th dose independent rect. 24 4
335 554.63 precipitation 0.1 14400 > th dose independent rect. 19 1
351 555.01 precipitation 0.1 14400 < th dose independent rect. 19 1
352 555.01 precipitation 0.1 14400 < th dose dependent rect. 19 1
368 555.53 humidity 80.0 720 > th dose dependent rect. 4 20
372 555.63 temperature 25.0 30 < th dose independent rect. 2 14
373 555.69 wind 9.0 4320 < th dose independent rect. 17 16
388 556.03 radiation 1.0 720 < th dose dependent rect. 6 19
392 556.11 precipitation 0.1 14400 > th dose dependent rect. 9 6
438 557.02 precipitation 0.1 14400 < th dose independent rect. 12 4
439 557.02 precipitation 0.1 14400 < th dose dependent rect. 12 4
445 557.10 precipitation 0.1 14400 > th dose independent rect. 12 4
471 557.61 humidity 90.0 720 < th dose independent rect. 18 1
499 558.08 humidity 80.0 720 > th dose independent rect. 14 18
502 558.11 wind 9.0 4320 > th dose dependent sin 13 NA
528 558.50 humidity 90.0 720 < th dose independent rect. 16 14
532 558.55 wind 5.0 4320 > th dose dependent rect. 14 13
555 558.76 wind 3.0 43200 > th dose independent rect. 24 4
589 559.23 humidity 90.0 14400 > th dose independent rect. 6 2
603 559.48 humidity 90.0 14400 > th dose dependent rect. 2 19
635 559.98 temperature 20.0 10 > th dose dependent rect. 6 16
644 560.20 humidity 90.0 14400 > th dose independent rect. 3 7
656 560.37 humidity 90.0 720 > th dose dependent rect. 5 16
665 560.50 wind 9.0 4320 > th dose independent sin 13 NA
672 560.59 wind 7.0 4320 < th dose independent sin 14 NA
674 560.62 temperature 30.0 10 < th dose dependent rect. 2 19
683 560.68 wind 9.0 14400 > th dose independent rect. 6 5
711 561.06 wind 5.0 4320 > th dose dependent sin 14 NA
732 561.29 humidity 90.0 720 > th dose dependent sin 22 NA
738 561.36 humidity 80.0 720 < th dose independent rect. 16 9
741 561.38 humidity 70.0 720 > th dose dependent rect. 19 22
746 561.43 wind 5.0 270 < th dose dependent rect. 5 10
750 561.47 precipitation 0.1 14400 > th dose dependent rect. 12 4
773 561.66 humidity 90.0 720 < th dose dependent sin 12 NA
807 561.94 humidity 80.0 720 > th dose independent rect. 11 21
878 562.67 humidity 70.0 720 > th dose dependent no NA NA
886 562.80 wind 7.0 4320 < th dose independent rect. 14 19
895 562.87 humidity 90.0 14400 > th dose independent rect. 1 20
921 563.07 humidity 70.0 720 > th dose dependent rect. 15 10
936 563.24 humidity 90.0 14400 > th dose dependent sin 1 NA
946 563.29 humidity 90.0 14400 > th dose dependent rect. 6 3
961 563.43 wind 7.0 4320 > th dose independent rect. 14 19
996 563.64 precipitation 0.1 14400 > th dose dependent rect. 19 1