Os06g0195600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SAC domain protein 3.
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Os06g0195600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SAC domain protein 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.75 | 0.209 | 12.1 | -0.303 | 0.882 | -0.306 | -0.305 | 1.41 | 0.16 | 6.49 | 93.48 | 135 | -- | -- |
| 21.35 | 0.215 | 12.1 | -0.302 | 0.913 | -0.251 | 0.115 | -- | 0.158 | 6.45 | 92 | 194 | -- | -- |
| 19.91 | 0.208 | 12.1 | -0.312 | 0.889 | -0.337 | -- | 1.3 | 0.157 | 6.46 | 93.65 | 154 | -- | -- |
| 21.02 | 0.214 | 12.1 | -0.318 | 0.883 | -0.517 | -- | -- | 0.184 | 6.51 | 94.8 | 161 | -- | -- |
| 36.94 | 0.283 | 12.1 | -0.32 | -- | 0.786 | -- | 0.132 | 0.265 | -- | 64.97 | 493 | -- | -- |
| 22.29 | 0.221 | 12.1 | -0.321 | 0.829 | -- | -0.0264 | -- | 0.193 | 6.63 | -- | -- | -- | -- |
| 22.29 | 0.221 | 12.1 | -0.322 | 0.829 | -- | -- | -- | 0.193 | 6.63 | -- | -- | -- | -- |
| 36.95 | 0.283 | 12.1 | -0.318 | -- | 0.786 | -- | -- | 0.257 | -- | 64.88 | 492 | -- | -- |
| 23.62 | 0.226 | 12.1 | -- | 0.894 | -0.579 | -- | -- | 0.199 | 6.55 | 94.69 | 175 | -- | -- |
| 58.09 | 0.356 | 12.1 | -0.302 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 25.01 | 0.234 | 12.1 | -- | 0.825 | -- | -- | -- | 0.229 | 6.65 | -- | -- | -- | -- |
| 39.58 | 0.293 | 12.1 | -- | -- | 0.793 | -- | -- | 0.289 | -- | 64 | 500 | -- | -- |
| 60.5 | 0.363 | 12.1 | -- | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.03 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 24 | 9 |
| 5 | 19.17 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 17 | 19.27 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 24 | 11 |
| 33 | 19.39 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 9 |
| 36 | 19.40 | atmosphere | 1005.0 | 30 | > th | dose dependent | sin | 6 | NA |
| 39 | 19.42 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 8 |
| 40 | 19.42 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 10 |
| 48 | 19.43 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 69 | 19.51 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 18 |
| 72 | 19.53 | atmosphere | 1010.0 | 30 | < th | dose dependent | sin | 7 | NA |
| 76 | 19.54 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 79 | 19.54 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 14 |
| 110 | 19.60 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 1 | 5 |
| 131 | 19.65 | temperature | 25.0 | 720 | > th | dose independent | rect. | 9 | 2 |
| 132 | 19.65 | humidity | 90.0 | 30 | > th | dose dependent | sin | 6 | NA |
| 172 | 19.72 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 183 | 19.75 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 196 | 19.78 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 1 | 20 |
| 200 | 19.80 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 216 | 19.85 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 238 | 19.89 | humidity | 90.0 | 30 | > th | dose independent | sin | 7 | NA |
| 276 | 19.94 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 278 | 19.94 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 21 | 17 |
| 280 | 19.95 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 296 | 19.96 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 302 | 19.97 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 306 | 19.97 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 24 | 17 |
| 321 | 19.98 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 24 | 21 |
| 334 | 19.99 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 369 | 20.01 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 407 | 20.05 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 420 | 20.05 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 21 | 22 |
| 423 | 20.06 | wind | 1.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 443 | 20.07 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 24 | 8 |
| 465 | 20.07 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 482 | 20.08 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 7 |
| 513 | 20.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 19 |
| 549 | 20.11 | temperature | 25.0 | 720 | < th | dose independent | rect. | 4 | 8 |
| 573 | 20.12 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 20 | 10 |
| 575 | 20.12 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 21 | 15 |
| 576 | 20.12 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 21 | 17 |
| 603 | 20.13 | humidity | 90.0 | 30 | < th | dose independent | sin | 6 | NA |
| 616 | 20.13 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 620 | 20.13 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 640 | 20.14 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 656 | 20.15 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 657 | 20.15 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 5 |
| 659 | 20.15 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 660 | 20.15 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 716 | 20.18 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 5 |
| 717 | 20.18 | humidity | 90.0 | 30 | > th | dose independent | rect. | 3 | 5 |
| 719 | 20.18 | humidity | 90.0 | 30 | > th | dose independent | rect. | 3 | 7 |
| 746 | 20.19 | radiation | 10.0 | 30 | < th | dose independent | rect. | 1 | 5 |
| 751 | 20.19 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 771 | 20.19 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 16 |
| 786 | 20.19 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 803 | 20.20 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 11 |
| 816 | 20.20 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 831 | 20.21 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 852 | 20.22 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 8 |
| 876 | 20.22 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 927 | 20.23 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 952 | 20.24 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 3 |
| 954 | 20.24 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 21 | 19 |
| 955 | 20.24 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 993 | 20.25 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 21 | 5 |