Os06g0194900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sucrose synthase 2 (EC 2.4.1.13).
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Os06g0194900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sucrose synthase 2 (EC 2.4.1.13).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.9 | 0.282 | 14.3 | 0.709 | 1.05 | -0.249 | 1.71 | 2.6 | 0.545 | 19.1 | 2 | 6 | -- | -- |
| 40.6 | 0.297 | 14.3 | 0.659 | 1.23 | -0.219 | 0.254 | -- | 0.555 | 19.2 | 29.95 | 12 | -- | -- |
| 39.82 | 0.296 | 14.3 | 0.664 | 1.17 | 0.22 | -- | 0.403 | 0.572 | 18.1 | 2 | 6 | -- | -- |
| 39.12 | 0.293 | 14.3 | 0.686 | 1.14 | 0.336 | -- | -- | 0.588 | 17.6 | 1.633e-05 | 9 | -- | -- |
| 108.49 | 0.485 | 14.2 | 0.645 | -- | 0.238 | -- | 0.483 | 0.568 | -- | 0.77 | 2 | -- | -- |
| 42.34 | 0.305 | 14.3 | 0.659 | 1.22 | -- | 0.129 | -- | 0.561 | 18.9 | -- | -- | -- | -- |
| 42.39 | 0.305 | 14.3 | 0.657 | 1.22 | -- | -- | -- | 0.561 | 18.9 | -- | -- | -- | -- |
| 105.98 | 0.482 | 14.2 | 0.651 | -- | 0.365 | -- | -- | 0.562 | -- | 1.633e-05 | 9 | -- | -- |
| 51.44 | 0.336 | 14.3 | -- | 1.13 | 0.282 | -- | -- | 0.508 | 17.9 | 1.633e-05 | 9 | -- | -- |
| 120.97 | 0.514 | 14.3 | 0.63 | -- | -- | -- | -- | 0.538 | -- | -- | -- | -- | -- |
| 53.75 | 0.343 | 14.3 | -- | 1.22 | -- | -- | -- | 0.488 | 18.9 | -- | -- | -- | -- |
| 117.16 | 0.506 | 14.3 | -- | -- | 0.356 | -- | -- | 0.49 | -- | 1.633e-05 | 9 | -- | -- |
| 131.45 | 0.535 | 14.3 | -- | -- | -- | -- | -- | 0.468 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 3 | 32.46 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 7 | 32.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 10 |
| 11 | 32.63 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 19 | 32.91 | temperature | 10.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 118 | 33.90 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 12 | 16 |
| 124 | 33.98 | temperature | 25.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 135 | 34.07 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 8 |
| 149 | 34.11 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 16 |
| 177 | 34.31 | temperature | 25.0 | 10 | > th | dose independent | rect. | 15 | 20 |
| 184 | 34.35 | temperature | 25.0 | 10 | > th | dose independent | rect. | 17 | 16 |
| 200 | 34.41 | temperature | 30.0 | 10 | < th | dose dependent | sin | 13 | NA |
| 203 | 34.42 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 206 | 34.44 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 214 | 34.47 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 223 | 34.50 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 235 | 34.53 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 19 |
| 267 | 34.66 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 10 |
| 268 | 34.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 15 |
| 283 | 34.70 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 323 | 34.82 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 326 | 34.83 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 16 |
| 341 | 34.88 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 391 | 35.02 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 435 | 35.14 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 439 | 35.14 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 445 | 35.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 446 | 35.16 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 456 | 35.18 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 12 | 15 |
| 488 | 35.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 8 |
| 493 | 35.24 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 501 | 35.27 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 509 | 35.29 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 517 | 35.31 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 539 | 35.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 546 | 35.36 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 561 | 35.39 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 593 | 35.43 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 639 | 35.52 | temperature | 25.0 | 30 | < th | dose independent | sin | 12 | NA |
| 640 | 35.52 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 645 | 35.53 | radiation | 10.0 | 720 | < th | dose independent | sin | 11 | NA |
| 646 | 35.53 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 19 |
| 686 | 35.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 17 |
| 710 | 35.62 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 752 | 35.66 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 757 | 35.67 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 758 | 35.67 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 767 | 35.68 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 803 | 35.73 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 808 | 35.73 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 821 | 35.74 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 845 | 35.78 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 861 | 35.80 | radiation | 1.0 | 90 | < th | dose independent | sin | 11 | NA |
| 862 | 35.80 | humidity | 60.0 | 270 | > th | dose independent | rect. | 11 | 15 |
| 864 | 35.80 | radiation | 1.0 | 270 | < th | dose dependent | sin | 13 | NA |
| 879 | 35.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 881 | 35.82 | radiation | 10.0 | 720 | < th | dose independent | rect. | 2 | 23 |
| 883 | 35.82 | radiation | 1.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 887 | 35.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 939 | 35.90 | radiation | 10.0 | 720 | < th | dose independent | no | NA | NA |
| 965 | 35.91 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 979 | 35.92 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 17 | 16 |
| 993 | 35.94 | radiation | 10.0 | 720 | < th | dose independent | rect. | 4 | 18 |