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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0194200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0293) R2 : 0.284
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.781 (0.0768) R2dC : 0.163 R2C : 0.117
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.56 (0.0618) R2dN8 : 0.167 R2N8 : 0.121
σ : 0.553
deviance : 139.99
__
_____
C
peak time of C : 17.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.79 0.503 5.42 0.11 0.601 -0.481 -0.956 0.965 0.27 18.6 24.7 46 -- --
116.55 0.503 5.38 0.366 0.686 -0.475 -1.04 -- 0.369 18.2 24.19 75 -- --
115.02 0.5 5.43 0.061 0.677 -0.473 -- 0.89 0.306 18.2 24 67 -- --
119.37 0.509 5.39 0.359 0.651 -0.462 -- -- 0.374 18.3 24.2 74 -- --
130.95 0.533 5.45 0.0247 -- -0.71 -- 1.04 0.206 -- 25 298 -- --
129.99 0.535 5.33 0.527 0.796 -- -1.02 -- 0.623 17.5 -- -- -- --
132.57 0.539 5.34 0.53 0.789 -- -- -- 0.619 17.4 -- -- -- --
132.5 0.536 5.36 0.312 -- -0.738 -- -- 0.446 -- 26.6 403 -- --
122.48 0.515 5.4 -- 0.675 -0.482 -- -- 0.348 18.2 24 66 -- --
165 0.6 5.32 0.504 -- -- -- -- 0.6 -- -- -- -- --
139.99 0.553 5.35 -- 0.781 -- -- -- 0.56 17.5 -- -- -- --
135.15 0.541 5.37 -- -- -0.788 -- -- 0.415 -- 26.7 423 -- --
171.7 0.612 5.34 -- -- -- -- -- 0.544 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 111.19 temperature 10.0 10 > th dose dependent rect. 6 14
3 112.02 atmosphere 995.0 30 > th dose dependent rect. 9 21
7 112.98 temperature 10.0 30 > th dose dependent rect. 6 16
11 113.51 temperature 20.0 270 > th dose dependent rect. 6 1
12 113.52 temperature 25.0 30 < th dose independent rect. 22 18
15 113.62 temperature 20.0 30 > th dose dependent rect. 6 18
16 113.64 temperature 25.0 10 > th dose independent rect. 6 14
18 113.70 temperature 20.0 30 > th dose dependent rect. 6 22
20 113.81 temperature 20.0 720 > th dose dependent rect. 13 20
28 114.02 temperature 25.0 10 > th dose independent rect. 6 4
31 114.07 temperature 30.0 30 < th dose dependent rect. 7 23
35 114.16 atmosphere 1005.0 30 > th dose dependent rect. 6 3
45 114.27 temperature 10.0 270 > th dose dependent rect. 2 22
51 114.33 temperature 25.0 30 > th dose independent rect. 23 21
54 114.42 temperature 25.0 1440 > th dose dependent rect. 12 1
55 114.42 temperature 15.0 270 > th dose dependent rect. 2 7
58 114.43 temperature 30.0 30 < th dose dependent rect. 9 21
61 114.49 temperature 20.0 30 > th dose dependent sin 7 NA
67 114.62 temperature 30.0 720 < th dose independent rect. 14 15
69 114.63 temperature 30.0 720 < th dose independent rect. 15 6
75 114.68 temperature 20.0 30 > th dose dependent rect. 21 23
78 114.71 temperature 20.0 720 > th dose dependent rect. 19 22
80 114.77 temperature 25.0 4320 > th dose dependent rect. 7 1
84 114.81 temperature 10.0 720 > th dose dependent rect. 13 20
95 114.89 temperature 25.0 30 < th dose independent rect. 18 22
109 114.95 temperature 25.0 1440 > th dose dependent rect. 12 7
123 115.02 temperature 10.0 720 > th dose dependent rect. 19 22
130 115.06 temperature 20.0 90 > th dose dependent rect. 5 4
131 115.06 temperature 10.0 720 > th dose dependent rect. 21 21
133 115.06 temperature 20.0 30 > th dose dependent rect. 23 23
137 115.10 temperature 25.0 1440 > th dose dependent rect. 15 3
138 115.10 temperature 20.0 720 > th dose dependent rect. 19 14
141 115.12 temperature 25.0 30 < th dose independent sin 6 NA
147 115.13 wind 5.0 43200 < th dose independent rect. 19 2
151 115.15 temperature 25.0 1440 > th dose dependent rect. 12 15
156 115.16 wind 5.0 43200 > th dose independent rect. 19 2
164 115.17 temperature 25.0 10 > th dose independent rect. 6 22
177 115.23 wind 3.0 43200 > th dose dependent rect. 20 1
201 115.30 temperature 25.0 30 > th dose independent rect. 21 23
210 115.33 temperature 20.0 30 > th dose dependent rect. 17 16
211 115.34 temperature 20.0 270 > th dose independent rect. 5 2
214 115.35 atmosphere 995.0 30 > th dose dependent rect. 7 23
216 115.36 temperature 25.0 4320 > th dose dependent rect. 24 10
236 115.42 temperature 25.0 4320 > th dose dependent rect. 3 7
238 115.43 temperature 20.0 720 > th dose dependent sin 11 NA
244 115.44 temperature 25.0 30 > th dose independent rect. 23 23
248 115.45 temperature 30.0 720 > th dose independent rect. 15 2
259 115.47 temperature 30.0 720 < th dose independent rect. 15 4
262 115.49 temperature 30.0 30 < th dose independent rect. 9 21
277 115.52 temperature 25.0 1440 > th dose independent rect. 17 5
279 115.52 temperature 25.0 1440 > th dose dependent sin 16 NA
285 115.53 atmosphere 1000.0 30 > th dose independent rect. 7 23
286 115.53 temperature 10.0 270 > th dose dependent rect. 3 19
299 115.55 temperature 20.0 10 > th dose dependent rect. 13 23
311 115.59 temperature 30.0 14400 > th dose independent rect. 12 1
312 115.59 temperature 30.0 720 > th dose independent rect. 14 4
333 115.62 temperature 30.0 14400 < th dose independent rect. 15 2
342 115.64 precipitation 0.1 30 < th dose independent rect. 7 23
344 115.64 precipitation 0.1 30 < th dose dependent rect. 7 23
345 115.65 temperature 30.0 14400 > th dose independent rect. 15 1
352 115.66 temperature 30.0 720 < th dose independent rect. 9 10
354 115.67 temperature 30.0 14400 > th dose independent rect. 11 5
359 115.68 temperature 30.0 14400 < th dose independent rect. 12 1
362 115.69 temperature 20.0 270 > th dose independent rect. 3 6
382 115.72 temperature 30.0 14400 < th dose independent rect. 11 5
386 115.73 temperature 25.0 10 > th dose independent rect. 6 18
394 115.73 temperature 20.0 30 > th dose dependent rect. 17 23
397 115.74 temperature 25.0 270 < th dose independent rect. 7 21
406 115.76 temperature 25.0 90 < th dose independent rect. 7 23
414 115.77 temperature 25.0 30 > th dose independent rect. 1 19
436 115.81 temperature 20.0 720 > th dose dependent rect. 8 23
440 115.82 temperature 20.0 720 > th dose dependent no NA NA
453 115.86 temperature 30.0 720 < th dose independent rect. 7 14
458 115.87 temperature 25.0 30 < th dose independent rect. 23 23
464 115.89 temperature 25.0 30 < th dose independent rect. 9 23
468 115.90 temperature 30.0 720 < th dose independent rect. 9 19
480 115.92 temperature 25.0 30 < th dose independent rect. 21 23
484 115.92 radiation 1.0 43200 < th dose dependent rect. 19 6
487 115.93 temperature 25.0 30 < th dose independent rect. 1 23
488 115.93 temperature 25.0 30 < th dose independent rect. 11 23
489 115.93 temperature 20.0 720 > th dose dependent rect. 21 10
491 115.94 temperature 20.0 30 > th dose dependent no NA NA
492 115.94 humidity 80.0 30 > th dose dependent rect. 6 1
496 115.95 atmosphere 1005.0 30 > th dose dependent rect. 6 1
506 115.97 temperature 25.0 30 < th dose independent no NA NA
546 116.00 temperature 30.0 14400 < th dose independent rect. 14 16
561 116.01 temperature 30.0 14400 < th dose independent rect. 14 13
578 116.02 temperature 30.0 14400 < th dose independent rect. 11 19
582 116.02 temperature 30.0 720 < th dose independent rect. 14 22
590 116.03 temperature 30.0 14400 < th dose independent rect. 11 13
591 116.03 temperature 30.0 14400 < th dose independent rect. 11 16
595 116.03 temperature 25.0 30 < th dose independent rect. 13 23
599 116.03 temperature 20.0 30 > th dose dependent rect. 2 23
605 116.04 wind 3.0 30 < th dose dependent rect. 6 1
627 116.05 radiation 1.0 30 > th dose dependent rect. 6 1
632 116.06 temperature 30.0 720 < th dose independent rect. 9 12
634 116.06 temperature 25.0 30 < th dose independent rect. 15 23
647 116.07 temperature 25.0 30 < th dose independent rect. 3 23
667 116.09 temperature 30.0 14400 > th dose dependent rect. 14 1
685 116.11 radiation 1.0 43200 < th dose dependent rect. 22 3
698 116.13 atmosphere 1005.0 30 > th dose independent rect. 6 3
705 116.13 temperature 20.0 720 > th dose dependent rect. 23 23
740 116.19 temperature 25.0 1440 > th dose independent rect. 19 1
741 116.19 atmosphere 995.0 43200 > th dose independent rect. 12 1
767 116.20 temperature 30.0 14400 > th dose independent sin 17 NA
774 116.20 temperature 20.0 30 > th dose dependent rect. 23 21
778 116.21 temperature 30.0 14400 < th dose independent rect. 5 12
801 116.22 temperature 30.0 14400 < th dose independent sin 17 NA
827 116.23 atmosphere 1000.0 10 > th dose independent rect. 20 10
856 116.24 temperature 30.0 30 < th dose dependent rect. 6 1
881 116.26 temperature 10.0 720 > th dose dependent rect. 19 14
891 116.28 radiation 1.0 10 > th dose independent rect. 6 1
922 116.28 temperature 30.0 720 < th dose independent rect. 24 19
996 116.31 radiation 1.0 43200 < th dose dependent rect. 24 1