Os06g0191800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os06g0191800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 244.5 | 0.735 | 7.81 | -0.0126 | 1.09 | -2.19 | 1.85 | 3.58 | -0.649 | 4.32 | 4.903 | 1516 | 10.9 | 17.1 |
| 246.02 | 0.731 | 7.81 | 0.092 | 1.37 | -3.12 | 2.21 | -- | -0.6 | 3.17 | 1.703 | 1568 | 10.7 | 16.9 |
| 248.76 | 0.735 | 7.83 | -0.0492 | 1.28 | -2.62 | -- | 3.5 | -0.657 | 3.28 | 4.457 | 1568 | 10.6 | 16.9 |
| 262.06 | 0.754 | 7.82 | 0.0916 | 1.39 | -3.17 | -- | -- | -0.609 | 3.07 | 1.94 | 1570 | 10.6 | 16.9 |
| 314.46 | 0.826 | 7.82 | 0.0243 | -- | -2.09 | -- | 3.54 | -0.61 | -- | 5.366 | 1503 | 10.6 | 16.8 |
| 336.09 | 0.859 | 7.73 | 0.457 | 1.06 | -- | 2.23 | -- | -0.31 | 5.54 | -- | -- | -- | -- |
| 345.65 | 0.871 | 7.73 | 0.471 | 1.09 | -- | -- | -- | -0.318 | 6.26 | -- | -- | -- | -- |
| 327.06 | 0.842 | 7.81 | 0.188 | -- | -2.56 | -- | -- | -0.557 | -- | 2.34 | 1496 | 10.6 | 16.7 |
| 262.17 | 0.754 | 7.82 | -- | 1.4 | -3.22 | -- | -- | -0.623 | 3.03 | 1.92 | 1568 | 10.6 | 16.9 |
| 407.71 | 0.943 | 7.75 | 0.5 | -- | -- | -- | -- | -0.294 | -- | -- | -- | -- | -- |
| 351.49 | 0.877 | 7.74 | -- | 1.1 | -- | -- | -- | -0.37 | 6.24 | -- | -- | -- | -- |
| 327.8 | 0.843 | 7.81 | -- | -- | -2.63 | -- | -- | -0.579 | -- | 2.212 | 1492 | 10.6 | 16.7 |
| 414.31 | 0.95 | 7.76 | -- | -- | -- | -- | -- | -0.349 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 264.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 2 | 265.01 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 4 | 265.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 6 | 265.63 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 15 | 265.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 20 | 265.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 37 | 266.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 45 | 266.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 49 | 266.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 82 | 267.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 83 | 267.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 85 | 267.88 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 100 | 268.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 101 | 268.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 132 | 268.33 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 150 | 268.97 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 152 | 269.01 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 169 | 269.47 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 176 | 269.59 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 189 | 269.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 192 | 269.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 206 | 270.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 218 | 270.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 230 | 270.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 274 | 271.17 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 293 | 271.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 306 | 271.57 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 401 | 273.49 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 405 | 273.61 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 427 | 273.94 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 450 | 274.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 467 | 274.38 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 545 | 274.96 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 578 | 275.21 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 588 | 275.40 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 22 |
| 594 | 275.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 669 | 276.56 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 755 | 277.54 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 788 | 277.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 789 | 277.80 | humidity | 90 | 1440 | < th | dose dependent | sin | 23 | NA |
| 853 | 278.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 878 | 278.43 | humidity | 50 | 1440 | > th | dose dependent | sin | 22 | NA |
| 924 | 278.68 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 972 | 278.97 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 14 |