Os06g0191700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cytochrome P450.
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Os06g0191700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cytochrome P450.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 266.71 | 0.767 | 8.11 | 0.043 | 1.05 | -1.81 | 2.18 | 3.12 | -0.636 | 4.88 | 1.669 | 1507 | -- | -- |
| 274.15 | 0.771 | 8.07 | 0.381 | 1.08 | -2.05 | 2.22 | -- | -0.565 | 4.62 | 1.54 | 1520 | -- | -- |
| 276.8 | 0.775 | 8.11 | 0.0493 | 1.11 | -1.87 | -- | 3.39 | -0.654 | 4.73 | 1.791 | 1534 | -- | -- |
| 290.06 | 0.793 | 8.08 | 0.402 | 1.1 | -2.01 | -- | -- | -0.559 | 4.81 | 1.542 | 1520 | -- | -- |
| 335.5 | 0.853 | 8.15 | -0.0229 | -- | -1.69 | -- | 3.55 | -0.659 | -- | 1.8 | 1471 | -- | -- |
| 324.93 | 0.845 | 8.01 | 0.671 | 0.99 | -- | 2.37 | -- | -0.287 | 5.4 | -- | -- | -- | -- |
| 336.25 | 0.859 | 8.01 | 0.682 | 1.03 | -- | -- | -- | -0.296 | 6.17 | -- | -- | -- | -- |
| 341.87 | 0.861 | 8.08 | 0.45 | -- | -1.83 | -- | -- | -0.5 | -- | 1.55 | 1453 | -- | -- |
| 293.92 | 0.798 | 8.09 | -- | 1.12 | -2.16 | -- | -- | -0.622 | 4.71 | 1.54 | 1520 | -- | -- |
| 391.49 | 0.925 | 8.03 | 0.711 | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
| 348.51 | 0.873 | 8.03 | -- | 1.04 | -- | -- | -- | -0.372 | 6.14 | -- | -- | -- | -- |
| 346.11 | 0.866 | 8.08 | -- | -- | -1.96 | -- | -- | -0.569 | -- | 1.543 | 1452 | -- | -- |
| 404.82 | 0.939 | 8.05 | -- | -- | -- | -- | -- | -0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 261.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 2 | 261.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 9 | 262.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 10 | 262.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 13 | 262.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 17 | 262.39 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 18 | 262.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 24 | 262.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 46 | 263.13 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 79 | 264.64 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 84 | 264.81 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 85 | 264.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 86 | 265.01 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 87 | 265.10 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 92 | 265.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 96 | 265.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 4 | 13 |
| 97 | 265.33 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 102 | 265.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 103 | 265.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 160 | 266.52 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 170 | 266.74 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 179 | 266.96 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 189 | 267.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 190 | 267.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 226 | 268.22 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 322 | 271.04 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 334 | 271.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 338 | 271.13 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 350 | 271.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 355 | 271.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 358 | 271.43 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 440 | 272.53 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 479 | 272.96 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 529 | 273.96 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 594 | 275.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 623 | 275.51 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 625 | 275.57 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 631 | 275.64 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 651 | 275.97 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 760 | 276.59 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 810 | 277.18 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 811 | 277.18 | humidity | 90 | 1440 | < th | dose dependent | sin | 23 | NA |
| 877 | 277.59 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 879 | 277.59 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 881 | 277.59 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 932 | 277.59 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 934 | 277.59 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 936 | 277.59 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |