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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0191500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.024) R2 : 0.00695
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0901 (0.0505) R2dN8 : 0.00898 R2N8 : 0.00695
σ : 0.451
deviance : 93.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.39 0.447 2.83 -0.0175 0.0551 0.291 0.163 0.927 0.0976 15.4 19.88 272 -- --
92.18 0.447 2.8 0.116 0.0407 0.152 -0.0179 -- 0.159 15.4 22.2 378 -- --
90.36 0.443 2.83 -0.00501 0.0547 0.304 -- 0.922 0.0976 15.3 19.8 269 -- --
92 0.447 2.81 0.118 0.00981 0.166 -- -- 0.155 16.1 21.8 740 -- --
90.52 0.443 2.83 -0.00941 -- 0.287 -- 0.9 0.0968 -- 19.79 269 -- --
93.35 0.453 2.82 0.0497 0.00621 -- -0.166 -- 0.0966 17.6 -- -- -- --
93.39 0.453 2.82 0.051 0.0226 -- -- -- 0.0961 12.4 -- -- -- --
92 0.447 2.81 0.114 -- 0.182 -- -- 0.152 -- 21.84 740 -- --
92.29 0.447 2.81 -- 0.0201 0.162 -- -- 0.135 19 21.99 742 -- --
93.42 0.452 2.82 0.0502 -- -- -- -- 0.0957 -- -- -- -- --
93.45 0.452 2.82 -- 0.0219 -- -- -- 0.0904 12.2 -- -- -- --
92.31 0.447 2.81 -- -- 0.158 -- -- 0.134 -- 21.9 742 -- --
93.49 0.451 2.82 -- -- -- -- -- 0.0901 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.04 atmosphere 1005.0 30 > th dose dependent rect. 7 1
3 81.81 temperature 25.0 90 < th dose dependent rect. 7 1
15 82.75 radiation 20.0 30 < th dose independent rect. 7 1
25 83.18 atmosphere 1005.0 90 < th dose dependent rect. 7 1
41 83.59 wind 3.0 30 < th dose dependent rect. 7 1
42 83.63 atmosphere 1005.0 30 > th dose independent rect. 7 1
48 83.86 temperature 20.0 90 < th dose dependent rect. 6 15
50 83.95 temperature 20.0 30 < th dose independent rect. 7 9
58 83.97 wind 3.0 10 < th dose independent rect. 7 1
59 83.97 temperature 20.0 10 < th dose independent rect. 7 7
64 83.98 temperature 20.0 10 < th dose independent rect. 7 5
82 84.09 temperature 20.0 10 < th dose independent rect. 8 2
103 84.10 radiation 40.0 30 < th dose dependent rect. 7 1
105 84.11 wind 5.0 10 > th dose independent rect. 8 1
111 84.11 wind 5.0 10 > th dose dependent rect. 8 1
146 84.25 radiation 1.0 30 > th dose independent rect. 7 1
216 84.69 humidity 70.0 10 > th dose independent rect. 7 1
221 84.75 humidity 50.0 30 > th dose dependent rect. 7 1
252 85.14 precipitation 0.1 30 < th dose independent rect. 7 1
253 85.14 precipitation 0.1 30 < th dose dependent rect. 7 1
254 85.15 wind 9.0 1440 < th dose independent rect. 8 1
257 85.15 temperature 10.0 1440 > th dose independent rect. 8 1
262 85.15 humidity 50.0 1440 > th dose independent rect. 8 1
264 85.15 atmosphere 995.0 1440 > th dose independent rect. 8 1
267 85.15 atmosphere 1015.0 1440 < th dose independent rect. 8 1
268 85.15 temperature 10.0 1440 > th dose independent rect. 9 23
275 85.19 atmosphere 1010.0 30 < th dose independent rect. 7 1
278 85.23 temperature 10.0 30 > th dose independent rect. 7 1
280 85.23 temperature 30.0 30 < th dose independent rect. 7 1
282 85.23 humidity 50.0 30 > th dose independent rect. 7 1
286 85.23 temperature 10.0 30 > th dose independent rect. 8 23
300 85.29 wind 1.0 90 < th dose independent rect. 6 6
315 85.39 wind 9.0 30 < th dose independent rect. 8 23
330 85.44 wind 1.0 10 > th dose independent rect. 7 1
392 86.14 temperature 20.0 90 < th dose independent rect. 6 16
393 86.15 precipitation 0.1 30 < th dose independent rect. 8 23
397 86.15 precipitation 0.1 30 < th dose dependent rect. 8 23
418 86.33 atmosphere 1005.0 90 > th dose dependent rect. 20 1
422 86.35 wind 1.0 90 < th dose dependent rect. 6 6
423 86.38 humidity 90.0 90 > th dose dependent rect. 6 1
430 86.42 atmosphere 995.0 30 > th dose independent rect. 8 23
445 86.57 humidity 80.0 90 < th dose dependent rect. 6 1
447 86.58 atmosphere 1005.0 10 > th dose dependent rect. 20 2
448 86.59 humidity 90.0 10 < th dose independent rect. 7 1
450 86.59 atmosphere 1015.0 30 < th dose independent rect. 8 23
460 86.68 temperature 20.0 270 < th dose independent rect. 4 17
483 86.84 wind 3.0 90 > th dose dependent rect. 6 1
510 87.14 wind 5.0 10 > th dose dependent rect. 21 1
514 87.16 humidity 80.0 10 < th dose dependent rect. 22 1
532 87.19 wind 5.0 10 > th dose independent rect. 21 1
534 87.20 humidity 80.0 90 < th dose independent rect. 6 1
545 87.25 temperature 10.0 30 > th dose dependent rect. 7 1
611 87.55 humidity 90.0 90 > th dose independent rect. 6 2
615 87.56 precipitation 0.1 10 < th dose independent rect. 7 15
616 87.56 precipitation 0.1 10 < th dose dependent rect. 7 15
621 87.59 temperature 10.0 30 > th dose dependent rect. 8 23
633 87.66 humidity 80.0 10 < th dose independent rect. 21 1
646 87.70 atmosphere 1005.0 30 > th dose dependent rect. 15 7
653 87.74 temperature 20.0 270 > th dose independent sin 23 NA
664 87.79 wind 9.0 10 < th dose independent rect. 7 15
674 87.85 temperature 20.0 270 < th dose independent sin 23 NA
680 87.86 wind 9.0 10 < th dose independent rect. 22 9
681 87.86 temperature 10.0 10 > th dose independent rect. 22 9
682 87.86 temperature 30.0 10 < th dose independent rect. 22 9
683 87.86 humidity 50.0 10 > th dose independent rect. 22 9
686 87.86 atmosphere 995.0 10 > th dose independent rect. 22 9
687 87.86 radiation 20.0 10 < th dose independent rect. 22 9
690 87.86 temperature 10.0 10 > th dose independent rect. 7 15
692 87.86 atmosphere 1015.0 10 < th dose independent rect. 7 15
710 87.91 temperature 25.0 270 < th dose dependent rect. 4 4
711 87.91 radiation 40.0 10 < th dose dependent rect. 22 9
746 87.97 temperature 10.0 1440 > th dose independent rect. 23 9
749 87.97 temperature 30.0 1440 < th dose independent rect. 23 9
753 87.97 humidity 50.0 1440 > th dose independent rect. 23 9
758 87.97 atmosphere 995.0 1440 > th dose independent rect. 23 9
759 87.97 temperature 10.0 1440 > th dose independent rect. 8 15
814 88.15 precipitation 0.1 30 < th dose independent rect. 22 9
817 88.15 precipitation 0.1 30 < th dose dependent rect. 22 9
819 88.16 temperature 20.0 270 < th dose independent rect. 4 4
839 88.23 atmosphere 1015.0 10 < th dose independent rect. 22 9
844 88.25 atmosphere 1005.0 90 > th dose independent rect. 20 1
845 88.25 precipitation 0.1 1440 < th dose independent rect. 8 1
848 88.25 precipitation 0.1 1440 < th dose dependent rect. 8 1
850 88.27 humidity 80.0 270 < th dose dependent rect. 4 3
858 88.30 humidity 80.0 270 < th dose independent rect. 4 3
905 88.44 atmosphere 1005.0 10 < th dose dependent rect. 4 5
916 88.46 wind 9.0 10 < th dose dependent rect. 8 23
926 88.48 temperature 20.0 270 < th dose independent rect. 4 6
932 88.49 radiation 40.0 1440 < th dose independent rect. 23 9
941 88.51 atmosphere 995.0 10 > th dose independent rect. 7 15
947 88.52 wind 1.0 90 < th dose dependent rect. 6 16
988 88.59 atmosphere 995.0 30 > th dose dependent rect. 7 15
992 88.60 wind 9.0 10 < th dose dependent rect. 22 9