Os06g0191300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MAP kinase kinase.
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Os06g0191300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MAP kinase kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.96 | 0.345 | 10.7 | 0.442 | 1.17 | -1.25 | 1 | 2.12 | 0.21 | 21 | 15.3 | 8 | -- | -- |
| 57.55 | 0.356 | 10.7 | 0.135 | 1.17 | -1.26 | 0.691 | -- | 0.132 | 20.8 | 15.3 | 8 | -- | -- |
| 57.08 | 0.355 | 10.7 | 0.328 | 1.17 | -1.28 | -- | 1.53 | 0.19 | 20.8 | 15.3 | 8 | -- | -- |
| 59.16 | 0.361 | 10.7 | 0.111 | 1.17 | -1.25 | -- | -- | 0.131 | 20.8 | 15.3 | 8 | -- | -- |
| 133.2 | 0.538 | 10.7 | 0.427 | -- | -1.55 | -- | 1.77 | 0.237 | -- | 15.73 | 3 | -- | -- |
| 73.43 | 0.402 | 10.8 | -0.11 | 1.28 | -- | 0.655 | -- | -0.0481 | 21.9 | -- | -- | -- | -- |
| 75.1 | 0.406 | 10.8 | -0.135 | 1.28 | -- | -- | -- | -0.0493 | 21.9 | -- | -- | -- | -- |
| 135.95 | 0.543 | 10.7 | 0.186 | -- | -1.56 | -- | -- | 0.186 | -- | 15.3 | 2 | -- | -- |
| 59.46 | 0.361 | 10.7 | -- | 1.18 | -1.2 | -- | -- | 0.112 | 20.9 | 15.31 | 6 | -- | -- |
| 173 | 0.615 | 10.7 | -0.121 | -- | -- | -- | -- | -0.0491 | -- | -- | -- | -- | -- |
| 75.58 | 0.407 | 10.8 | -- | 1.28 | -- | -- | -- | -0.0343 | 21.9 | -- | -- | -- | -- |
| 136.64 | 0.544 | 10.7 | -- | -- | -1.55 | -- | -- | 0.141 | -- | 13.02 | 2 | -- | -- |
| 173.39 | 0.615 | 10.7 | -- | -- | -- | -- | -- | -0.0357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.68 | temperature | 10 | 30 | > th | dose dependent | sin | 3 | NA |
| 6 | 50.56 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 20 | 51.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 33 | 52.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 53 | 53.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 56 | 53.46 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 21 |
| 64 | 53.57 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 21 |
| 65 | 53.57 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 66 | 53.59 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 82 | 53.60 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 89 | 53.60 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 105 | 53.62 | humidity | 50 | 43200 | < th | dose dependent | sin | 2 | NA |
| 128 | 53.63 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 188 | 53.65 | humidity | 50 | 43200 | < th | dose dependent | sin | 9 | NA |
| 202 | 53.66 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 204 | 53.66 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 206 | 53.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 215 | 53.67 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 251 | 53.70 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 323 | 53.78 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 6 |
| 368 | 53.82 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 386 | 53.85 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 399 | 53.86 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 412 | 53.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 413 | 53.88 | humidity | 50 | 43200 | < th | dose dependent | sin | 12 | NA |
| 429 | 53.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 482 | 53.96 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 484 | 53.96 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 511 | 53.99 | humidity | 50 | 43200 | < th | dose independent | sin | 8 | NA |
| 524 | 54.00 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 529 | 54.01 | humidity | 50 | 43200 | > th | dose independent | sin | 7 | NA |
| 533 | 54.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 539 | 54.03 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 562 | 54.05 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 587 | 54.09 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 597 | 54.10 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 598 | 54.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 601 | 54.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 609 | 54.11 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 637 | 54.13 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 645 | 54.14 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 659 | 54.16 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 681 | 54.19 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 691 | 54.20 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 694 | 54.20 | humidity | 70 | 43200 | < th | dose dependent | rect. | 14 | 19 |
| 700 | 54.21 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 729 | 54.22 | humidity | 70 | 43200 | < th | dose dependent | rect. | 15 | 16 |
| 765 | 54.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 770 | 54.25 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 800 | 54.26 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 876 | 54.29 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 958 | 54.32 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 17 |