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Os06g0191200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RanBP2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.21 (0.0226) R2 : 0.764
β1 : 1.24 (0.0837) R2dD : 0.127 R2D : 0.203
β2 : 0.571 (0.0567) R2dC : 0.0529 R2C : 0.0504
β3 : -2.58 (0.0932) R2dE : 0.482 R2E : 0.585
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.105 (0.0512) R2dN8 : 0.00343 R2N8 : 0.0201
σ : 0.413
deviance : 78.78
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C
peak time of C : 7.61
E
wheather : temperature
threshold : 27.58
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.2 0.415 6.2 1.34 0.582 -2.6 -0.238 -0.576 0.13 7.48 27.75 11 -- --
78.68 0.413 6.21 1.25 0.57 -2.57 -0.186 -- 0.105 7.61 27.61 10 -- --
78.24 0.412 6.2 1.35 0.57 -2.59 -- -0.572 0.127 7.45 27.58 10 -- --
78.78 0.413 6.21 1.24 0.571 -2.58 -- -- 0.105 7.61 27.58 10 -- --
94.88 0.456 6.21 1.38 -- -2.61 -- -0.716 0.14 -- 26.93 9 -- --
174.1 0.619 6.08 1.86 0.919 -- 0.135 -- 0.67 11.5 -- -- -- --
174.18 0.618 6.08 1.87 0.918 -- -- -- 0.671 11.5 -- -- -- --
95.62 0.455 6.23 1.26 -- -2.59 -- -- 0.112 -- 27.17 6 -- --
116.94 0.506 6.26 -- 0.609 -3.06 -- -- -0.119 6.54 27.58 10 -- --
227.11 0.704 6.1 1.84 -- -- -- -- 0.661 -- -- -- -- --
266.01 0.763 6.13 -- 0.898 -- -- -- 0.463 11.4 -- -- -- --
134.53 0.54 6.27 -- -- -2.95 -- -- -0.099 -- 27.07 10 -- --
316.6 0.831 6.15 -- -- -- -- -- 0.456 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.86 temperature 30 10 < th dose dependent rect. 17 23
2 82.82 temperature 30 10 < th dose dependent no NA NA
3 82.98 temperature 30 10 < th dose dependent rect. 21 23
4 82.99 temperature 30 10 < th dose dependent rect. 15 23
6 83.24 temperature 30 10 < th dose dependent rect. 13 23
7 83.26 temperature 30 10 < th dose dependent rect. 11 23
8 83.32 temperature 25 90 < th dose dependent rect. 7 22
9 83.40 temperature 30 10 < th dose dependent rect. 9 23
11 83.44 temperature 25 10 < th dose dependent rect. 7 23
19 84.07 temperature 25 10 < th dose dependent rect. 1 23
26 84.46 temperature 30 10 < th dose dependent rect. 19 23
29 84.57 temperature 25 10 < th dose dependent rect. 23 23
43 85.24 temperature 25 10 < th dose dependent rect. 3 23
79 87.14 temperature 10 10 > th dose dependent no NA NA
242 92.65 temperature 15 90 > th dose dependent rect. 3 23
245 92.68 temperature 15 10 > th dose dependent rect. 3 23
488 98.29 temperature 15 90 > th dose dependent rect. 13 23
499 98.59 temperature 25 1440 < th dose dependent rect. 21 2
514 98.80 temperature 25 1440 < th dose dependent rect. 17 19
520 98.85 temperature 25 1440 < th dose dependent rect. 19 17
587 99.52 temperature 15 270 > th dose dependent rect. 16 23
611 99.76 temperature 10 1440 > th dose dependent rect. 21 4
618 99.80 temperature 25 1440 < th dose dependent sin 10 NA
671 100.08 temperature 10 1440 > th dose dependent rect. 21 12
711 100.23 temperature 15 270 > th dose dependent rect. 10 23
722 100.26 temperature 15 10 > th dose dependent rect. 23 23
786 100.59 temperature 15 10 > th dose dependent rect. 13 23
799 100.62 temperature 10 1440 > th dose dependent sin 9 NA
963 101.20 temperature 25 1440 < th dose dependent rect. 3 23
967 101.22 temperature 25 1440 < th dose dependent no NA NA
977 101.26 temperature 25 1440 < th dose dependent rect. 9 23