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Os06g0188500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.65 (0.0212) R2 : 0.268
β1 : -0.921 (0.0776) R2dD : 0.235 R2D : 0.252
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.123 (0.0452) R2dN8 : 0.0158 R2N8 : 0.0326
σ : 0.398
deviance : 72.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.82 0.338 9.65 -0.921 0.296 -0.545 0.695 -0.0558 0.137 20.6 16.94 10 -- --
51.81 0.335 9.65 -0.921 0.296 -0.541 0.654 -- 0.139 20.6 16.85 10 -- --
52.68 0.338 9.65 -0.923 0.28 -0.498 -- 0.266 0.142 19.6 16.76 9 -- --
53.03 0.339 9.65 -0.938 0.282 -0.497 -- -- 0.138 19.7 16.63 10 -- --
56.48 0.35 9.65 -0.919 -- -0.432 -- 0.26 0.142 -- 17.3 9 -- --
61.43 0.367 9.65 -0.896 0.429 -- -0.278 -- 0.135 14.6 -- -- -- --
61.69 0.368 9.65 -0.903 0.43 -- -- -- 0.133 14.7 -- -- -- --
56.85 0.351 9.65 -0.937 -- -0.423 -- -- 0.134 -- 16.94 9 -- --
76.2 0.407 9.65 -- 0.299 -0.45 -- -- 0.214 18.7 17.76 12 -- --
72.45 0.398 9.65 -0.921 -- -- -- -- 0.123 -- -- -- -- --
83.19 0.427 9.62 -- 0.447 -- -- -- 0.234 14.7 -- -- -- --
79.21 0.415 9.62 -- -- -0.443 -- -- 0.237 -- 19.93 17 -- --
94.84 0.455 9.63 -- -- -- -- -- 0.225 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.61 temperature 15.0 270 > th dose independent rect. 6 7
2 43.84 wind 7.0 270 < th dose independent rect. 6 7
3 44.07 precipitation 0.1 270 < th dose independent rect. 13 17
4 44.07 precipitation 0.1 270 < th dose dependent rect. 13 17
6 44.16 atmosphere 995.0 270 > th dose independent rect. 13 17
7 44.21 precipitation 0.1 270 < th dose independent rect. 6 7
8 44.21 precipitation 0.1 270 < th dose dependent rect. 6 7
10 44.29 atmosphere 995.0 270 > th dose independent rect. 6 7
11 44.29 atmosphere 1015.0 270 < th dose independent rect. 6 7
12 44.29 temperature 10.0 270 > th dose independent rect. 13 17
13 44.41 humidity 50.0 270 > th dose independent rect. 6 19
14 44.47 humidity 50.0 270 > th dose independent rect. 17 9
16 44.54 radiation 1.0 270 > th dose independent rect. 6 7
17 44.58 precipitation 0.1 270 < th dose independent rect. 2 15
18 44.58 precipitation 0.1 270 < th dose dependent rect. 2 15
19 44.63 wind 1.0 270 > th dose independent rect. 13 17
20 44.63 radiation 30.0 270 < th dose dependent rect. 17 9
22 44.65 wind 9.0 270 < th dose independent rect. 17 9
25 44.66 wind 9.0 270 < th dose independent rect. 13 17
26 44.68 radiation 10.0 270 < th dose independent rect. 17 9
27 44.73 humidity 50.0 270 > th dose independent rect. 6 7
29 44.79 temperature 10.0 270 > th dose independent rect. 17 9
33 44.79 temperature 10.0 270 > th dose independent rect. 2 15
34 44.79 atmosphere 1015.0 270 < th dose independent rect. 2 15
37 44.89 wind 9.0 270 < th dose dependent rect. 6 7
41 45.02 atmosphere 995.0 270 > th dose independent rect. 2 15
42 45.03 radiation 10.0 270 < th dose independent rect. 1 6
45 45.04 temperature 10.0 270 > th dose dependent rect. 6 6
49 45.12 wind 1.0 270 > th dose independent rect. 1 5
61 45.32 temperature 10.0 270 > th dose dependent rect. 7 4
65 45.36 radiation 20.0 270 < th dose dependent rect. 1 6
66 45.37 temperature 15.0 270 > th dose independent rect. 7 4
70 45.44 wind 9.0 270 < th dose independent rect. 6 19
71 45.46 wind 9.0 270 < th dose independent rect. 2 15
73 45.50 radiation 1.0 270 > th dose independent rect. 7 4
84 45.56 wind 7.0 270 < th dose independent rect. 7 4
89 45.58 wind 9.0 270 < th dose dependent rect. 7 4
93 45.61 precipitation 0.1 270 < th dose independent rect. 1 5
95 45.61 precipitation 0.1 270 < th dose dependent rect. 1 5
98 45.63 wind 7.0 270 < th dose independent rect. 1 5
101 45.65 precipitation 0.1 270 < th dose independent rect. 17 9
102 45.65 precipitation 0.1 270 < th dose dependent rect. 17 9
117 45.72 atmosphere 1010.0 270 < th dose independent rect. 1 5
129 45.74 humidity 70.0 270 > th dose independent rect. 1 6
132 45.75 temperature 10.0 270 > th dose independent rect. 1 5
134 45.75 temperature 30.0 270 < th dose independent rect. 1 5
135 45.75 humidity 50.0 270 > th dose independent rect. 1 5
138 45.75 atmosphere 995.0 270 > th dose independent rect. 1 5
144 45.75 temperature 10.0 270 > th dose independent rect. 6 19
149 45.77 precipitation 0.1 270 < th dose independent rect. 11 20
151 45.77 precipitation 0.1 270 < th dose dependent rect. 11 20
152 45.78 radiation 30.0 90 < th dose independent rect. 3 6
157 45.80 radiation 10.0 270 < th dose dependent rect. 2 4
175 45.84 humidity 90.0 10 < th dose independent rect. 9 6
184 45.89 precipitation 0.1 270 < th dose independent rect. 7 4
188 45.89 precipitation 0.1 270 < th dose dependent rect. 7 4
209 45.92 humidity 70.0 90 > th dose independent rect. 3 6
214 45.93 temperature 10.0 270 > th dose dependent rect. 19 16
216 45.94 wind 9.0 10 < th dose independent rect. 9 18
223 45.98 atmosphere 995.0 270 > th dose independent rect. 7 4
224 45.98 atmosphere 1015.0 270 < th dose independent rect. 7 4
228 45.98 temperature 10.0 270 > th dose independent rect. 11 20
245 46.04 temperature 30.0 270 < th dose dependent rect. 1 5
249 46.05 wind 1.0 270 > th dose independent rect. 11 20
250 46.05 atmosphere 995.0 270 > th dose independent rect. 11 20
256 46.07 humidity 50.0 270 > th dose independent rect. 7 4
265 46.12 wind 7.0 10 < th dose independent rect. 3 6
269 46.13 radiation 40.0 10 < th dose independent rect. 3 6
273 46.14 radiation 40.0 90 < th dose independent rect. 13 19
274 46.14 temperature 10.0 270 > th dose dependent rect. 9 1
275 46.14 radiation 40.0 90 < th dose dependent rect. 3 6
285 46.17 precipitation 0.1 10 < th dose independent rect. 3 6
295 46.17 wind 9.0 270 < th dose independent rect. 5 22
296 46.17 precipitation 0.1 10 < th dose dependent rect. 3 6
315 46.19 temperature 10.0 270 > th dose dependent rect. 18 7
325 46.21 radiation 40.0 270 < th dose independent rect. 13 17
331 46.24 temperature 30.0 270 < th dose dependent rect. 2 3
332 46.24 temperature 10.0 10 > th dose dependent rect. 9 6
341 46.27 temperature 10.0 10 > th dose independent rect. 3 6
343 46.27 temperature 30.0 10 < th dose independent rect. 3 6
344 46.27 humidity 50.0 10 > th dose independent rect. 3 6
346 46.27 atmosphere 995.0 10 > th dose independent rect. 3 6
347 46.27 atmosphere 1015.0 10 < th dose independent rect. 3 6
350 46.27 temperature 10.0 10 > th dose independent rect. 9 18
351 46.28 radiation 1.0 270 > th dose independent rect. 9 1
353 46.28 temperature 30.0 270 < th dose independent rect. 18 8
356 46.28 precipitation 0.1 270 < th dose independent rect. 6 19
358 46.28 precipitation 0.1 270 < th dose dependent rect. 6 19
359 46.29 temperature 15.0 270 > th dose independent rect. 9 1
393 46.35 temperature 30.0 90 < th dose independent rect. 3 6
396 46.35 atmosphere 995.0 270 > th dose independent rect. 17 9
429 46.42 wind 9.0 270 < th dose independent rect. 11 20
433 46.43 precipitation 0.1 10 < th dose independent rect. 9 18
437 46.43 precipitation 0.1 10 < th dose dependent rect. 9 18
473 46.48 precipitation 0.1 270 < th dose independent rect. 3 2
475 46.48 precipitation 0.1 270 < th dose dependent rect. 3 2
485 46.50 atmosphere 1015.0 270 < th dose independent rect. 6 19
499 46.54 temperature 10.0 1440 > th dose independent rect. 3 7
502 46.54 atmosphere 995.0 1440 > th dose independent rect. 3 7
503 46.54 temperature 10.0 1440 > th dose independent rect. 10 17
506 46.54 radiation 30.0 10 < th dose independent rect. 14 19
507 46.54 radiation 1.0 270 < th dose dependent rect. 3 2
509 46.55 wind 7.0 270 < th dose independent rect. 3 2
536 46.58 radiation 10.0 270 < th dose dependent rect. 1 13
538 46.59 wind 7.0 270 < th dose independent rect. 9 1
540 46.59 temperature 10.0 270 > th dose independent rect. 3 2
542 46.59 temperature 30.0 270 < th dose independent rect. 3 2
543 46.59 humidity 50.0 270 > th dose independent rect. 3 2
546 46.59 atmosphere 995.0 270 > th dose independent rect. 3 2
547 46.59 atmosphere 1010.0 270 < th dose independent rect. 3 2
549 46.59 radiation 20.0 270 < th dose independent rect. 3 2
564 46.59 temperature 10.0 270 > th dose independent rect. 5 22
570 46.60 radiation 1.0 270 < th dose independent rect. 3 2
575 46.60 wind 9.0 270 < th dose dependent rect. 6 19
584 46.64 wind 9.0 10 < th dose independent rect. 9 6
586 46.64 precipitation 0.1 90 < th dose independent rect. 8 7
589 46.64 atmosphere 1015.0 270 < th dose independent rect. 7 17
590 46.64 precipitation 0.1 90 < th dose dependent rect. 8 7
593 46.65 radiation 1.0 270 < th dose independent rect. 2 9
598 46.65 radiation 40.0 10 < th dose dependent rect. 13 20
627 46.70 radiation 1.0 270 < th dose independent rect. 6 20
631 46.71 radiation 1.0 270 < th dose dependent rect. 6 20
673 46.77 wind 1.0 270 > th dose independent rect. 11 8
676 46.77 humidity 50.0 270 > th dose dependent rect. 17 8
694 46.78 wind 1.0 270 > th dose independent rect. 1 17
709 46.80 radiation 40.0 90 < th dose independent rect. 15 17
711 46.81 precipitation 0.1 270 < th dose independent rect. 9 1
715 46.81 precipitation 0.1 270 < th dose dependent rect. 9 1
726 46.83 atmosphere 1015.0 10 < th dose independent rect. 9 18
728 46.83 wind 9.0 30 < th dose dependent rect. 3 6
736 46.85 temperature 10.0 10 > th dose independent rect. 9 6
738 46.85 atmosphere 995.0 10 > th dose independent rect. 9 6
739 46.85 atmosphere 1015.0 10 < th dose independent rect. 9 6
741 46.85 precipitation 0.1 10 < th dose independent rect. 9 6
744 46.85 temperature 10.0 10 > th dose independent rect. 15 18
746 46.85 precipitation 0.1 10 < th dose dependent rect. 9 6
778 46.92 atmosphere 995.0 270 > th dose independent rect. 9 1
779 46.92 atmosphere 1015.0 270 < th dose independent rect. 9 1
781 46.92 temperature 10.0 270 > th dose independent rect. 10 23
786 46.94 radiation 1.0 10 > th dose independent rect. 9 6
788 46.94 humidity 50.0 30 > th dose independent rect. 9 18
789 46.94 atmosphere 995.0 10 > th dose independent rect. 9 18
832 47.01 humidity 50.0 270 > th dose independent rect. 9 1
840 47.02 humidity 90.0 270 < th dose independent rect. 9 1
847 47.03 wind 9.0 270 < th dose dependent rect. 2 4
858 47.06 wind 1.0 270 > th dose independent rect. 9 1
859 47.06 wind 1.0 270 > th dose independent rect. 6 7
865 47.07 wind 9.0 10 < th dose independent rect. 15 18
873 47.09 wind 7.0 270 < th dose independent rect. 19 16
888 47.10 atmosphere 995.0 270 > th dose independent rect. 11 8
895 47.10 humidity 50.0 90 > th dose dependent rect. 19 8
897 47.11 temperature 10.0 1440 > th dose independent rect. 10 6
911 47.11 temperature 10.0 1440 > th dose independent rect. 16 18
921 47.13 precipitation 0.1 270 < th dose independent rect. 11 9
924 47.13 precipitation 0.1 270 < th dose dependent rect. 11 9
927 47.14 wind 1.0 270 > th dose independent rect. 7 4
931 47.14 humidity 50.0 270 > th dose dependent rect. 1 5
932 47.14 humidity 50.0 90 > th dose dependent rect. 3 6
966 47.22 wind 1.0 10 > th dose independent rect. 9 6
984 47.25 temperature 10.0 270 > th dose independent rect. 11 8
985 47.25 atmosphere 1015.0 270 < th dose independent rect. 11 8
987 47.25 temperature 10.0 270 > th dose independent rect. 19 16
988 47.25 atmosphere 995.0 270 > th dose independent rect. 19 16