Os06g0188400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ionotropic glutamate receptor family protein.
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Os06g0188400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ionotropic glutamate receptor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.63 | 0.655 | 7.48 | -0.476 | 1.18 | -0.938 | 0.73 | -1.62 | -1.58 | 7.62 | 20.03 | 1462 | -- | -- |
| 198.94 | 0.657 | 7.44 | -0.252 | 1.18 | -0.667 | 0.721 | -- | -1.53 | 7.66 | 20.4 | 1490 | -- | -- |
| 196.1 | 0.652 | 7.48 | -0.45 | 1.18 | -0.948 | -- | -1.6 | -1.57 | 7.67 | 20.02 | 1476 | -- | -- |
| 200.28 | 0.659 | 7.43 | -0.208 | 1.19 | -0.68 | -- | -- | -1.52 | 7.68 | 20.35 | 1516 | -- | -- |
| 269.92 | 0.765 | 7.5 | -0.449 | -- | -0.803 | -- | -1.33 | -1.56 | -- | 20.3 | 890 | -- | -- |
| 208.16 | 0.676 | 7.47 | -0.501 | 1.19 | -- | 0.795 | -- | -1.66 | 7.67 | -- | -- | -- | -- |
| 209.94 | 0.679 | 7.47 | -0.481 | 1.18 | -- | -- | -- | -1.67 | 7.72 | -- | -- | -- | -- |
| 223.52 | 0.696 | 7.43 | -0.182 | -- | -1.03 | -- | -- | -1.34 | -- | 26.09 | 455 | -- | -- |
| 201.23 | 0.661 | 7.43 | -- | 1.16 | -0.74 | -- | -- | -1.49 | 7.72 | 20.4 | 1551 | -- | -- |
| 285.69 | 0.79 | 7.5 | -0.465 | -- | -- | -- | -- | -1.65 | -- | -- | -- | -- | -- |
| 216.03 | 0.688 | 7.46 | -- | 1.18 | -- | -- | -- | -1.61 | 7.75 | -- | -- | -- | -- |
| 224.36 | 0.698 | 7.42 | -- | -- | -1.06 | -- | -- | -1.31 | -- | 26.07 | 467 | -- | -- |
| 291.4 | 0.797 | 7.49 | -- | -- | -- | -- | -- | -1.6 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.92 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 22 | 3 |
| 11 | 187.91 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 13 | 188.19 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 16 | 188.33 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 18 | 188.58 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 25 | 188.76 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 31 | 189.14 | humidity | 90.0 | 720 | > th | dose independent | rect. | 22 | 3 |
| 36 | 189.40 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 37 | 189.40 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 40 | 189.53 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 52 | 189.93 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 77 | 190.82 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 85 | 191.16 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 97 | 191.44 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 104 | 191.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 116 | 191.64 | humidity | 90.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 126 | 191.74 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 132 | 191.81 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 138 | 191.93 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 148 | 192.04 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 150 | 192.05 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 3 |
| 151 | 192.08 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 15 |
| 154 | 192.08 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 162 | 192.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 187 | 192.41 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 16 |
| 191 | 192.45 | wind | 5.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 205 | 192.62 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 213 | 192.66 | wind | 5.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 236 | 192.86 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 22 | 1 |
| 242 | 192.89 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 22 | 18 |
| 254 | 192.99 | temperature | 25.0 | 10 | > th | dose independent | rect. | 2 | 7 |
| 275 | 193.16 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 20 |
| 320 | 193.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 321 | 193.41 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 24 | 16 |
| 323 | 193.42 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 324 | 193.43 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 338 | 193.45 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 3 | 13 |
| 367 | 193.58 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 14 |
| 368 | 193.58 | radiation | 20.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 463 | 193.98 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 468 | 193.99 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 14 |
| 490 | 194.07 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 506 | 194.11 | temperature | 20.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 514 | 194.14 | temperature | 20.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 544 | 194.21 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 566 | 194.25 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 5 |
| 682 | 194.42 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 686 | 194.43 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 8 |
| 724 | 194.46 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 725 | 194.46 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 857 | 194.57 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 902 | 194.60 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 908 | 194.60 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 922 | 194.61 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 941 | 194.62 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 979 | 194.65 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 992 | 194.66 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 993 | 194.66 | radiation | 10.0 | 10 | > th | dose independent | rect. | 6 | 1 |