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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0186300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0257) R2 : 0.506
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.75 (0.084) R2dE : 0.481 R2E : 0.495
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.146 (0.0545) R2dN8 : 0.01 R2N8 : 0.0244
σ : 0.482
deviance : 107.12
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 33
memory length : 289
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12
open length of G : 3.65

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.89 0.479 3.63 0.247 0.2 1.81 0.734 -0.00701 0.174 17.7 30.4 271 12 3.85
103.65 0.474 3.63 0.264 0.195 1.78 0.763 -- 0.173 17.7 30.32 281 12 3.8
104.16 0.475 3.64 0.232 0.201 1.75 -- 0.533 0.16 17.9 30.3 286 12.1 3.53
104.72 0.477 3.64 0.238 0.202 1.74 -- -- 0.164 17.7 30.4 284 12.1 3.53
105.41 0.478 3.63 0.216 -- 1.77 -- 0.568 0.164 -- 33.1 293 12 3.6
161.96 0.597 3.61 0.151 0.947 -- -0.145 -- 0.336 16.9 -- -- -- --
162.01 0.596 3.61 0.15 0.946 -- -- -- 0.335 16.9 -- -- -- --
105.89 0.479 3.63 0.225 -- 1.76 -- -- 0.159 -- 33.1 292 12 3.6
106.21 0.48 3.64 -- 0.218 1.69 -- -- 0.156 17.9 30.39 283 12.1 3.52
209.13 0.676 3.6 0.115 -- -- -- -- 0.311 -- -- -- -- --
162.6 0.596 3.61 -- 0.943 -- -- -- 0.318 16.9 -- -- -- --
107.12 0.482 3.63 -- -- 1.75 -- -- 0.146 -- 33 289 12 3.65
209.48 0.676 3.6 -- -- -- -- -- 0.298 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.01 temperature 30.0 270 < th dose independent rect. 12 4
3 108.18 temperature 30.0 270 < th dose independent rect. 13 2
5 110.03 humidity 60.0 270 > th dose independent rect. 12 4
9 110.84 humidity 50.0 90 > th dose dependent rect. 13 4
20 113.81 atmosphere 995.0 270 > th dose dependent rect. 12 4
30 115.22 atmosphere 1005.0 90 > th dose independent rect. 13 5
37 116.08 humidity 60.0 10 > th dose independent rect. 13 5
42 116.32 humidity 50.0 270 > th dose dependent rect. 13 1
43 116.38 humidity 50.0 10 > th dose dependent rect. 13 4
47 116.93 atmosphere 995.0 270 > th dose independent rect. 12 4
52 117.69 precipitation 0.1 270 < th dose independent rect. 16 20
53 117.69 precipitation 0.1 270 < th dose dependent rect. 16 20
56 118.00 wind 9.0 270 < th dose independent rect. 16 20
60 118.07 radiation 40.0 90 < th dose independent rect. 12 5
71 118.45 atmosphere 1010.0 270 < th dose independent rect. 12 4
72 118.54 temperature 10.0 270 > th dose independent rect. 12 4
75 118.54 temperature 10.0 270 > th dose independent rect. 16 20
90 119.03 wind 9.0 270 < th dose independent rect. 12 4
93 119.19 precipitation 0.1 270 < th dose independent rect. 12 4
94 119.19 precipitation 0.1 270 < th dose dependent rect. 12 4
120 120.12 atmosphere 1005.0 10 > th dose independent rect. 13 5
125 120.45 atmosphere 995.0 10 > th dose dependent rect. 13 5
133 120.83 temperature 10.0 270 > th dose independent rect. 11 6
134 120.83 atmosphere 1015.0 270 < th dose independent rect. 11 6
135 120.83 temperature 10.0 270 > th dose independent rect. 17 18
139 120.89 atmosphere 995.0 90 > th dose independent rect. 17 20
152 121.15 radiation 40.0 90 < th dose dependent rect. 13 4
153 121.17 wind 1.0 90 > th dose independent rect. 13 4
177 121.68 humidity 90.0 270 < th dose independent rect. 12 4
183 121.85 radiation 40.0 10 < th dose dependent rect. 13 4
187 121.95 atmosphere 995.0 270 > th dose independent rect. 17 18
218 122.70 wind 1.0 90 > th dose dependent rect. 13 4
233 123.06 humidity 50.0 90 > th dose independent rect. 17 20
246 123.33 humidity 50.0 270 > th dose independent rect. 17 18
248 123.37 radiation 1.0 270 > th dose independent rect. 12 3
250 123.45 precipitation 0.1 270 < th dose independent rect. 3 9
251 123.45 precipitation 0.1 270 < th dose dependent rect. 3 9
253 123.51 radiation 40.0 270 < th dose independent rect. 13 2
258 123.68 wind 1.0 270 > th dose independent rect. 11 6
273 123.92 atmosphere 1005.0 270 > th dose independent rect. 13 1
275 123.92 temperature 10.0 270 > th dose independent rect. 3 9
276 123.92 atmosphere 995.0 270 > th dose independent rect. 3 9
277 123.92 atmosphere 1015.0 270 < th dose independent rect. 3 9
278 123.92 temperature 10.0 270 > th dose independent rect. 12 15
290 124.09 wind 9.0 270 < th dose independent rect. 3 9
295 124.14 temperature 30.0 30 < th dose independent rect. 13 19
327 124.86 atmosphere 995.0 10 > th dose independent rect. 13 5
329 124.87 humidity 50.0 270 > th dose independent rect. 3 9
368 125.52 radiation 1.0 270 > th dose independent rect. 17 19
389 125.83 atmosphere 995.0 270 > th dose independent rect. 12 15
399 125.88 wind 9.0 270 < th dose independent rect. 12 15
400 125.91 precipitation 0.1 270 < th dose independent rect. 7 14
402 125.91 precipitation 0.1 270 < th dose dependent rect. 7 14
406 125.94 wind 1.0 270 > th dose independent rect. 16 20
422 126.18 temperature 10.0 10 > th dose independent rect. 13 5
424 126.18 atmosphere 1010.0 10 < th dose independent rect. 13 5
427 126.18 temperature 10.0 10 > th dose independent rect. 18 19
435 126.22 precipitation 0.1 10 < th dose independent rect. 13 5
436 126.22 precipitation 0.1 10 < th dose dependent rect. 13 5
450 126.35 wind 9.0 270 < th dose dependent rect. 12 3
467 126.49 radiation 20.0 10 < th dose independent rect. 13 4
546 127.23 wind 9.0 270 < th dose independent rect. 7 14
547 127.24 wind 1.0 270 > th dose independent rect. 7 14
550 127.28 atmosphere 995.0 270 > th dose independent rect. 23 17
552 127.29 atmosphere 1015.0 90 < th dose independent rect. 17 20
557 127.32 radiation 40.0 270 < th dose dependent rect. 21 10
571 127.45 temperature 10.0 270 > th dose independent rect. 21 10
572 127.45 temperature 30.0 270 < th dose independent rect. 21 10
573 127.45 humidity 50.0 270 > th dose independent rect. 21 10
575 127.45 atmosphere 995.0 270 > th dose independent rect. 21 10
576 127.45 radiation 40.0 270 < th dose independent rect. 21 10
577 127.45 temperature 10.0 270 > th dose independent rect. 7 14
588 127.58 precipitation 0.1 270 < th dose independent rect. 12 15
589 127.58 precipitation 0.1 270 < th dose dependent rect. 12 15
599 127.68 wind 9.0 270 < th dose independent rect. 21 10
602 127.69 humidity 60.0 90 > th dose independent rect. 13 19
605 127.71 humidity 50.0 270 > th dose independent rect. 12 15
634 127.86 precipitation 0.1 270 < th dose independent rect. 16 7
636 127.86 precipitation 0.1 270 < th dose dependent rect. 16 7
654 127.98 wind 9.0 270 < th dose independent rect. 16 7
688 128.39 precipitation 0.1 270 < th dose independent rect. 21 10
690 128.39 precipitation 0.1 270 < th dose dependent rect. 21 10
691 128.43 temperature 10.0 270 > th dose independent rect. 16 7
692 128.43 radiation 40.0 270 < th dose independent rect. 16 7
693 128.43 temperature 10.0 270 > th dose independent rect. 23 17
713 128.60 temperature 30.0 270 < th dose independent rect. 23 17
729 128.71 atmosphere 1015.0 270 < th dose independent rect. 23 17
758 128.85 radiation 40.0 10 < th dose independent rect. 13 19
772 128.88 atmosphere 995.0 90 > th dose independent rect. 1 16
796 129.07 atmosphere 1015.0 270 < th dose independent rect. 17 18
797 129.08 wind 9.0 270 < th dose independent rect. 23 17
804 129.18 atmosphere 1015.0 270 < th dose independent rect. 7 14
838 129.42 wind 1.0 270 > th dose independent rect. 16 7
840 129.44 wind 1.0 270 > th dose independent rect. 3 9
842 129.46 temperature 10.0 1440 > th dose independent rect. 14 5
846 129.46 temperature 10.0 1440 > th dose independent rect. 19 19
849 129.46 atmosphere 995.0 1440 > th dose independent rect. 19 19
870 129.59 wind 1.0 10 > th dose dependent rect. 13 6
878 129.60 temperature 10.0 90 > th dose dependent rect. 17 20
896 129.78 precipitation 0.1 270 < th dose independent rect. 23 17
899 129.78 precipitation 0.1 270 < th dose dependent rect. 23 17
927 129.94 temperature 10.0 90 > th dose independent rect. 1 16
928 129.94 atmosphere 1015.0 90 < th dose independent rect. 1 16
937 130.03 humidity 60.0 270 > th dose independent rect. 23 17
976 130.31 wind 9.0 90 < th dose independent rect. 1 16