Os06g0185800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0185800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.03 | 0.618 | 3.72 | 0.693 | 0.991 | -0.982 | 1.3 | -1.8 | 0.344 | 21 | 29.5 | 365 | -- | -- |
| 173.98 | 0.614 | 3.74 | 0.564 | 0.971 | -1.15 | 1.4 | -- | 0.334 | 21 | 29.58 | 363 | -- | -- |
| 177.82 | 0.621 | 3.7 | 0.727 | 0.931 | -0.986 | -- | -2.56 | 0.331 | 21.4 | 29.3 | 388 | -- | -- |
| 179.62 | 0.624 | 3.73 | 0.444 | 0.981 | -1.23 | -- | -- | 0.332 | 21.2 | 29.5 | 373 | -- | -- |
| 218.31 | 0.688 | 3.67 | 0.798 | -- | -1.34 | -- | -2.75 | 0.31 | -- | 28.4 | 543 | -- | -- |
| 202.5 | 0.667 | 3.74 | 0.687 | 1.32 | -- | 2.41 | -- | 0.34 | 19.8 | -- | -- | -- | -- |
| 218.56 | 0.692 | 3.74 | 0.621 | 1.32 | -- | -- | -- | 0.341 | 20 | -- | -- | -- | -- |
| 222.38 | 0.695 | 3.69 | 0.356 | -- | -1.66 | -- | -- | 0.34 | -- | 29.45 | 497 | -- | -- |
| 183.77 | 0.631 | 3.74 | -- | 0.923 | -1.39 | -- | -- | 0.274 | 21.7 | 29.54 | 378 | -- | -- |
| 313.71 | 0.828 | 3.71 | 0.608 | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
| 228.71 | 0.707 | 3.76 | -- | 1.31 | -- | -- | -- | 0.272 | 20.1 | -- | -- | -- | -- |
| 225.39 | 0.699 | 3.73 | -- | -- | -1.72 | -- | -- | 0.214 | -- | 29.31 | 503 | -- | -- |
| 323.48 | 0.839 | 3.72 | -- | -- | -- | -- | -- | 0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.17 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 15 |
| 3 | 166.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 6 | 166.96 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 20 |
| 29 | 169.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 105 | 172.10 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 116 | 172.37 | temperature | 15 | 270 | > th | dose dependent | sin | 21 | NA |
| 128 | 172.53 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 10 |
| 153 | 173.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 7 |
| 166 | 173.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 200 | 173.76 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 15 |
| 205 | 173.88 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 7 |
| 208 | 173.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 11 |
| 217 | 174.05 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 16 |
| 228 | 174.13 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 231 | 174.15 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 18 |
| 257 | 174.34 | temperature | 30 | 720 | < th | dose independent | sin | 9 | NA |
| 281 | 174.55 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 328 | 174.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 380 | 175.14 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 8 |
| 440 | 175.48 | temperature | 30 | 270 | < th | dose independent | sin | 16 | NA |
| 453 | 175.55 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 11 |
| 480 | 175.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 16 |
| 513 | 175.87 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 6 |
| 623 | 176.42 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 18 |
| 696 | 176.63 | temperature | 30 | 270 | > th | dose independent | sin | 20 | NA |
| 727 | 176.70 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 12 |
| 825 | 177.07 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 879 | 177.25 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 906 | 177.34 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |