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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0185700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.26 (0.046) R2 : 0.188
β1 : 1.04 (0.168) R2dD : 0.071 R2D : 0.0646
β2 : 0.998 (0.12) R2dC : 0.124 R2C : 0.119
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0721 (0.0981) R2dN8 : 0.00129 R2N8 : -0.00324
σ : 0.864
deviance : 340.4
__
_____
C
peak time of C : 17.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
310.2 0.828 4.17 1.76 0.975 0.408 1.8 3.4 0.209 17.5 20.91 1428 -- --
322.88 0.837 4.24 0.927 0.698 0.626 1.44 -- 0.0523 17.4 29.5 317 -- --
317.64 0.83 4.16 1.74 0.989 0.425 -- 3.44 0.212 17.8 20.9 1545 -- --
325.81 0.841 4.26 0.918 0.664 0.782 -- -- 0.0604 18.1 29.58 315 -- --
368.07 0.894 4.14 1.76 -- 0.396 -- 3.47 0.212 -- 21 1568 -- --
333.64 0.856 4.27 1.05 0.985 -- 1.68 -- 0.0654 17.6 -- -- -- --
340.4 0.864 4.26 1.04 0.998 -- -- -- 0.0721 17.8 -- -- -- --
335.99 0.854 4.26 0.881 -- 1.1 -- -- -0.00977 -- 28.4 379 -- --
347.51 0.868 4.28 -- 0.585 0.941 -- -- -0.041 18.2 29.5 316 -- --
392.09 0.925 4.25 1.01 -- -- -- -- 0.0485 -- -- -- -- --
369.08 0.899 4.29 -- 0.982 -- -- -- -0.0441 17.8 -- -- -- --
353.46 0.876 4.3 -- -- 1.19 -- -- -0.168 -- 28.48 379 -- --
419.11 0.956 4.27 -- -- -- -- -- -0.0638 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 302.96 temperature 10.0 270 > th dose dependent rect. 2 15
7 304.84 temperature 15.0 4320 > th dose independent rect. 10 5
19 306.03 temperature 15.0 30 > th dose dependent rect. 2 18
23 306.43 temperature 25.0 720 < th dose independent rect. 23 13
24 306.47 temperature 25.0 270 > th dose independent rect. 2 16
52 308.00 temperature 30.0 90 < th dose independent rect. 8 6
60 308.23 temperature 30.0 270 < th dose dependent rect. 6 9
69 308.46 temperature 30.0 90 < th dose dependent rect. 8 7
94 308.82 temperature 20.0 720 > th dose dependent rect. 23 15
109 309.24 temperature 15.0 90 > th dose dependent rect. 5 15
138 309.72 temperature 25.0 720 < th dose independent sin 6 NA
152 309.90 temperature 25.0 270 < th dose independent rect. 6 8
168 310.07 temperature 25.0 720 > th dose independent rect. 23 15
182 310.20 temperature 20.0 720 > th dose dependent sin 6 NA
184 310.23 humidity 50.0 43200 > th dose independent rect. 22 6
201 310.47 temperature 30.0 90 < th dose independent rect. 8 18
203 310.50 radiation 40.0 90 < th dose independent rect. 8 6
207 310.50 temperature 10.0 720 > th dose dependent rect. 20 18
244 310.88 temperature 10.0 43200 > th dose independent rect. 10 5
246 310.90 temperature 20.0 1440 > th dose independent rect. 13 1
258 311.00 temperature 10.0 270 > th dose dependent rect. 23 22
268 311.11 temperature 30.0 90 < th dose independent rect. 8 15
274 311.17 temperature 15.0 90 > th dose dependent rect. 2 6
304 311.32 temperature 20.0 1440 < th dose independent rect. 2 19
309 311.34 temperature 20.0 1440 > th dose independent rect. 2 19
320 311.42 humidity 60.0 30 > th dose independent rect. 8 6
325 311.45 wind 9.0 270 < th dose independent rect. 10 23
326 311.45 temperature 20.0 1440 < th dose dependent rect. 13 1
327 311.46 temperature 20.0 1440 > th dose independent rect. 2 16
332 311.49 temperature 20.0 1440 < th dose independent rect. 13 1
339 311.51 temperature 25.0 90 > th dose dependent rect. 4 3
348 311.55 temperature 20.0 1440 < th dose independent rect. 2 17
361 311.59 temperature 20.0 1440 > th dose independent sin 0 NA
399 311.75 temperature 20.0 1440 < th dose independent sin 0 NA
407 311.79 temperature 25.0 720 > th dose independent sin 6 NA
426 311.89 radiation 40.0 270 < th dose independent rect. 6 8
428 311.91 temperature 25.0 270 > th dose independent rect. 10 8
446 311.96 atmosphere 995.0 90 > th dose dependent rect. 8 15
454 311.99 temperature 30.0 270 < th dose dependent rect. 6 20
456 312.00 temperature 20.0 270 > th dose dependent sin 1 NA
472 312.06 temperature 20.0 1440 > th dose independent rect. 9 21
496 312.14 humidity 50.0 90 > th dose dependent rect. 8 6
507 312.20 precipitation 0.1 1440 > th dose independent rect. 10 1
511 312.20 precipitation 0.1 1440 > th dose dependent rect. 10 1
534 312.26 atmosphere 1015.0 30 < th dose dependent rect. 2 7
568 312.37 temperature 20.0 1440 < th dose independent rect. 9 21
592 312.45 humidity 60.0 30 > th dose independent rect. 9 17
617 312.54 temperature 15.0 4320 < th dose dependent rect. 6 9
621 312.57 precipitation 0.1 4320 < th dose independent rect. 13 1
623 312.57 precipitation 0.1 4320 < th dose dependent rect. 13 1
644 312.64 humidity 90.0 4320 > th dose dependent rect. 13 2
670 312.75 temperature 25.0 90 > th dose independent rect. 2 6
682 312.78 temperature 15.0 1440 > th dose independent rect. 2 1
722 312.91 humidity 50.0 14400 > th dose independent rect. 18 9
737 312.94 humidity 70.0 10 > th dose independent rect. 2 7
752 312.98 wind 7.0 30 < th dose independent rect. 14 18
753 312.98 temperature 20.0 1440 < th dose dependent rect. 10 1
789 313.06 temperature 20.0 1440 > th dose independent rect. 19 23
791 313.07 temperature 15.0 4320 < th dose dependent rect. 6 6
793 313.08 radiation 40.0 270 < th dose independent rect. 7 19
794 313.09 temperature 20.0 1440 > th dose independent no NA NA
799 313.09 radiation 1.0 4320 < th dose dependent rect. 8 22
830 313.17 temperature 30.0 270 < th dose independent rect. 9 1
836 313.17 temperature 20.0 1440 > th dose independent rect. 13 23
837 313.17 temperature 10.0 270 > th dose dependent rect. 10 11
840 313.18 wind 9.0 90 < th dose dependent rect. 13 19
842 313.19 temperature 15.0 4320 < th dose independent rect. 9 8
846 313.19 temperature 30.0 270 < th dose dependent rect. 9 1
849 313.20 temperature 25.0 270 > th dose independent rect. 4 2
900 313.29 temperature 15.0 4320 < th dose dependent rect. 11 4
919 313.32 temperature 20.0 270 > th dose dependent rect. 10 8
925 313.33 humidity 90.0 4320 < th dose dependent rect. 2 1
949 313.38 atmosphere 995.0 4320 > th dose independent rect. 3 7
963 313.39 humidity 50.0 90 > th dose dependent rect. 23 9
967 313.41 temperature 25.0 90 > th dose independent rect. 4 4
994 313.46 humidity 50.0 14400 > th dose independent rect. 3 6
1000 313.48 precipitation 0.1 4320 > th dose independent rect. 13 1