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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0184500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BTB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0544) R2 : 0.0491
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.32 (0.272) R2dE : 0.0508 R2E : 0.0479
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0736 (0.116) R2dN8 : 0.00111 R2N8 : -0.00179
σ : 1.02
deviance : 476.98
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.26
memory length : 1388
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
463.66 1.01 3.18 0.131 2.97 2.53 -2.96 -3.32 0.0713 14.7 0.2998 379 -- --
466.03 1.01 3.19 -0.0888 3.29 2.75 0.564 -- 0.0141 14.7 0.3486 365 -- --
465.7 1.01 3.19 -0.0114 2.99 2.51 -- -0.853 0.036 14.8 0.3102 382 -- --
467.41 1.01 3.19 0.0093 3.44 2.88 -- -- 0.0608 14.7 0.3318 367 -- --
480.16 1.02 3.16 0.421 -- 1.21 -- -2.34 0.15 -- 0.4192 1361 -- --
497.27 1.05 3.22 -0.28 0.183 -- 0.172 -- -0.0669 14.6 -- -- -- --
497.35 1.04 3.22 -0.276 0.183 -- -- -- -0.0661 14.2 -- -- -- --
476.91 1.02 3.2 0.144 -- 1.42 -- -- 0.0892 -- 0.1877 1392 -- --
467.36 1.01 3.2 -- 3.47 2.91 -- -- 0.0472 14.7 0.3458 371 -- --
499.34 1.04 3.22 -0.284 -- -- -- -- -0.0705 -- -- -- -- --
499.36 1.05 3.22 -- 0.188 -- -- -- -0.0354 14.2 -- -- -- --
476.98 1.02 3.19 -- -- 1.32 -- -- 0.0736 -- 0.26 1388 -- --
501.46 1.05 3.22 -- -- -- -- -- -0.039 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 458.11 radiation 1 270 < th dose dependent rect. 20 22
2 458.88 temperature 20 270 > th dose independent rect. 3 8
6 460.48 radiation 1 90 < th dose dependent rect. 14 3
8 460.90 radiation 1 90 < th dose independent rect. 14 3
10 461.01 temperature 20 270 > th dose independent rect. 18 17
11 461.06 radiation 1 270 < th dose independent rect. 14 1
12 461.06 radiation 1 270 < th dose dependent rect. 14 1
14 461.55 radiation 1 270 < th dose dependent rect. 9 7
16 461.90 radiation 1 270 < th dose independent rect. 9 7
20 462.44 radiation 1 270 < th dose independent rect. 20 22
22 462.65 radiation 1 270 < th dose independent rect. 21 20
23 462.67 temperature 15 270 > th dose dependent rect. 17 18
36 463.57 radiation 1 270 < th dose dependent rect. 6 10
54 464.46 temperature 10 270 > th dose dependent rect. 15 21
64 464.86 temperature 20 270 < th dose dependent rect. 23 10
111 466.97 temperature 15 10 > th dose dependent rect. 18 18
135 467.71 temperature 20 270 > th dose independent sin 7 NA
136 467.74 temperature 20 270 < th dose independent sin 7 NA
156 468.31 temperature 20 270 < th dose independent rect. 22 12
157 468.32 temperature 15 270 > th dose dependent rect. 3 8
161 468.50 temperature 30 90 < th dose dependent rect. 23 19
169 468.86 temperature 20 30 > th dose independent rect. 5 9
175 468.97 humidity 50 14400 > th dose independent rect. 19 7
176 468.97 temperature 20 720 < th dose dependent rect. 23 2
182 469.07 temperature 20 720 < th dose dependent rect. 22 4
190 469.23 temperature 15 10 > th dose dependent rect. 18 20
191 469.26 humidity 50 43200 < th dose dependent rect. 13 1
201 469.40 humidity 80 14400 < th dose independent rect. 14 1
223 469.61 temperature 20 270 < th dose dependent sin 8 NA
226 469.64 radiation 1 4320 > th dose independent rect. 14 1
242 469.70 radiation 30 14400 < th dose independent rect. 20 11
244 469.71 temperature 10 90 > th dose dependent rect. 3 22
248 469.74 humidity 80 14400 > th dose independent rect. 14 1
279 469.90 humidity 50 43200 < th dose dependent rect. 16 22
293 469.94 humidity 50 43200 < th dose dependent sin 3 NA
321 470.00 radiation 10 14400 < th dose dependent rect. 20 9
341 470.03 humidity 80 14400 < th dose independent rect. 12 4
361 470.07 temperature 20 720 < th dose dependent rect. 20 7
397 470.17 temperature 30 270 < th dose dependent rect. 22 11
471 470.24 humidity 50 43200 < th dose dependent no NA NA
514 470.27 humidity 80 14400 > th dose independent rect. 12 3
524 470.30 radiation 10 14400 < th dose dependent rect. 3 2
527 470.31 radiation 10 14400 < th dose dependent rect. 22 7
551 470.41 radiation 10 14400 < th dose independent rect. 20 9
556 470.45 radiation 30 14400 < th dose independent rect. 22 9
557 470.45 humidity 60 43200 < th dose independent rect. 16 18
567 470.50 humidity 60 43200 > th dose independent rect. 16 18
572 470.54 humidity 70 43200 < th dose dependent rect. 18 2
614 470.67 humidity 50 43200 > th dose independent rect. 18 1
621 470.69 radiation 1 4320 < th dose independent rect. 14 1
623 470.69 radiation 1 4320 < th dose dependent rect. 14 1
627 470.70 humidity 90 14400 < th dose independent rect. 18 8
633 470.72 humidity 60 43200 < th dose dependent rect. 15 2
637 470.73 humidity 60 43200 < th dose dependent rect. 15 4
652 470.78 humidity 90 14400 > th dose independent rect. 18 8
658 470.79 humidity 50 43200 < th dose independent rect. 18 1
662 470.80 humidity 70 43200 < th dose dependent rect. 17 5
668 470.80 humidity 70 43200 < th dose dependent rect. 16 18
709 470.89 humidity 50 43200 < th dose independent rect. 10 1
710 470.89 humidity 80 43200 > th dose independent rect. 5 2
724 470.92 wind 5 14400 < th dose independent rect. 12 1
735 470.93 humidity 90 14400 < th dose independent rect. 15 11
779 470.97 humidity 90 14400 > th dose independent rect. 15 13
786 470.97 temperature 15 30 > th dose dependent rect. 3 9
831 471.01 humidity 60 43200 > th dose independent rect. 17 5
840 471.02 wind 5 14400 < th dose independent rect. 12 3
863 471.03 humidity 90 14400 > th dose independent rect. 14 16
886 471.04 humidity 50 43200 < th dose independent rect. 6 7
924 471.06 humidity 90 14400 < th dose independent rect. 15 15
942 471.07 humidity 90 14400 > th dose independent rect. 10 20
950 471.08 humidity 90 14400 < th dose independent sin 14 NA
1000 471.11 humidity 90 14400 > th dose independent sin 14 NA