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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0181900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.65 (0.0328) R2 : 0.342
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.27 (0.0836) R2dC : 0.334 R2C : 0.327
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.192 (0.0688) R2dN8 : 0.0146 R2N8 : 0.00729
σ : 0.617
deviance : 173.92
__
_____
C
peak time of C : 20
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.15 0.566 3.62 0.543 1.01 0.649 1.57 1.83 0.22 20.8 24.2 370 -- --
146.17 0.563 3.65 0.287 0.969 0.81 1.72 -- 0.165 20.7 24.8 419 -- --
152.41 0.575 3.6 0.62 0.99 0.585 -- 2.86 0.262 20.5 24.2 469 -- --
155.44 0.581 3.65 0.214 0.918 0.925 -- -- 0.16 20.8 25.13 448 -- --
190.18 0.642 3.61 0.409 -- 1.38 -- 1.99 0.156 -- 24.6 569 -- --
157.46 0.588 3.64 0.426 1.27 -- 2.08 -- 0.231 20 -- -- -- --
170.32 0.611 3.64 0.369 1.27 -- -- -- 0.233 19.9 -- -- -- --
190.3 0.642 3.63 0.071 -- 1.52 -- -- 0.0936 -- 24.6 561 -- --
156.55 0.583 3.65 -- 0.925 0.939 -- -- 0.152 20.9 25.14 431 -- --
258.32 0.751 3.61 0.356 -- -- -- -- 0.217 -- -- -- -- --
173.92 0.617 3.65 -- 1.27 -- -- -- 0.192 20 -- -- -- --
190.39 0.643 3.64 -- -- 1.55 -- -- 0.0749 -- 24.6 567 -- --
261.67 0.755 3.62 -- -- -- -- -- 0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.39 humidity 80 1440 < th dose independent rect. 7 1
2 140.45 humidity 80 1440 > th dose independent rect. 6 2
3 140.46 humidity 80 1440 < th dose independent rect. 23 10
5 140.52 wind 1 10 < th dose dependent rect. 5 7
10 140.78 wind 1 10 < th dose dependent rect. 5 5
17 141.02 humidity 80 1440 < th dose independent rect. 2 7
18 141.07 temperature 25 270 > th dose independent rect. 13 7
25 141.30 wind 1 10 < th dose dependent rect. 5 17
34 141.68 humidity 80 720 < th dose dependent rect. 7 2
40 141.78 wind 1 10 < th dose dependent rect. 5 13
44 141.82 wind 1 10 < th dose dependent rect. 5 11
53 141.98 temperature 25 270 < th dose independent rect. 9 17
64 142.07 humidity 80 720 < th dose dependent rect. 22 11
68 142.25 humidity 80 1440 > th dose independent rect. 23 10
70 142.26 temperature 15 270 > th dose dependent rect. 13 11
73 142.31 temperature 30 270 < th dose dependent rect. 10 11
76 142.34 humidity 80 720 < th dose dependent rect. 5 4
97 142.54 temperature 20 270 > th dose dependent rect. 13 8
99 142.54 temperature 30 270 < th dose dependent rect. 10 16
106 142.57 temperature 30 270 < th dose dependent sin 19 NA
111 142.67 humidity 80 1440 > th dose independent rect. 1 8
121 142.76 temperature 20 270 > th dose dependent sin 19 NA
122 142.77 temperature 25 270 < th dose independent sin 19 NA
126 142.83 humidity 70 270 < th dose dependent rect. 17 16
132 142.87 temperature 25 270 > th dose independent sin 19 NA
140 142.96 temperature 25 270 < th dose independent rect. 11 10
151 143.07 humidity 70 270 < th dose independent rect. 17 16
177 143.26 temperature 25 270 < th dose dependent rect. 12 8
214 143.62 wind 1 10 < th dose independent rect. 5 7
235 143.85 temperature 25 10 > th dose independent rect. 14 7
246 143.94 temperature 30 720 < th dose independent rect. 11 1
250 143.97 wind 1 10 < th dose independent rect. 5 5
254 143.97 temperature 25 270 > th dose independent rect. 13 13
258 143.98 wind 1 10 < th dose dependent sin 23 NA
290 144.18 temperature 30 30 < th dose dependent rect. 11 15
303 144.26 temperature 20 10 > th dose dependent sin 16 NA
314 144.35 wind 1 10 < th dose independent sin 23 NA
315 144.35 temperature 30 720 < th dose independent rect. 10 3
331 144.41 temperature 30 720 < th dose dependent rect. 10 3
353 144.50 radiation 1 270 > th dose dependent rect. 15 17
369 144.54 temperature 25 270 > th dose dependent rect. 11 21
371 144.55 wind 3 10 < th dose dependent rect. 2 11
384 144.59 wind 1 10 < th dose independent rect. 6 16
391 144.60 wind 3 10 < th dose dependent rect. 2 14
394 144.62 temperature 10 720 > th dose dependent rect. 7 9
399 144.64 temperature 20 10 > th dose dependent rect. 14 8
408 144.67 wind 3 10 < th dose dependent rect. 2 17
433 144.75 radiation 20 270 < th dose dependent sin 13 NA
438 144.76 temperature 20 270 > th dose dependent rect. 6 14
442 144.78 radiation 10 270 > th dose dependent rect. 16 15
452 144.82 temperature 20 720 > th dose dependent rect. 7 9
462 144.84 temperature 10 270 > th dose dependent rect. 5 14
490 144.90 humidity 60 4320 < th dose independent rect. 8 1
552 145.01 radiation 1 90 > th dose independent rect. 4 1
565 145.01 radiation 1 90 > th dose dependent rect. 4 1
577 145.02 temperature 20 10 > th dose dependent rect. 14 13
583 145.04 temperature 30 720 < th dose dependent rect. 11 1
607 145.09 wind 1 10 < th dose independent rect. 5 13
611 145.09 temperature 20 10 > th dose dependent rect. 14 10
639 145.16 humidity 60 4320 < th dose dependent rect. 8 1
674 145.21 wind 1 10 < th dose independent rect. 5 11
712 145.31 wind 3 10 < th dose dependent sin 3 NA
730 145.33 radiation 1 270 > th dose dependent sin 13 NA
751 145.35 temperature 25 10 < th dose dependent rect. 13 9
801 145.42 radiation 20 270 > th dose independent rect. 15 17
861 145.52 radiation 1 270 > th dose dependent rect. 17 13
895 145.61 temperature 30 270 < th dose independent rect. 16 22
932 145.67 radiation 10 270 < th dose independent sin 13 NA
936 145.68 radiation 10 270 < th dose dependent rect. 9 18
962 145.73 temperature 15 30 > th dose dependent rect. 7 13
993 145.78 radiation 10 270 < th dose dependent rect. 12 15