Os06g0181200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0181200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.18 | 0.364 | 8.54 | 0.794 | 1.51 | -0.0525 | -0.379 | 5.15 | -0.293 | 17.6 | 27.46 | 1342 | -- | -- |
| 66.54 | 0.38 | 8.65 | -0.293 | 1.42 | 0.528 | -0.782 | -- | -0.415 | 17.7 | 31.09 | 6099 | -- | -- |
| 60.53 | 0.362 | 8.54 | 0.81 | 1.51 | -0.0519 | -- | 5.19 | -0.289 | 17.6 | 27.4 | 1341 | -- | -- |
| 66.03 | 0.378 | 8.66 | -0.361 | 1.49 | 0.475 | -- | -- | -0.424 | 17.6 | 31.74 | 5499 | -- | -- |
| 163.75 | 0.596 | 8.66 | -0.47 | -- | 0.907 | -- | -0.137 | -0.583 | -- | 26.47 | 1949 | -- | -- |
| 76.34 | 0.41 | 8.69 | -0.253 | 1.46 | -- | -0.538 | -- | -0.51 | 17.7 | -- | -- | -- | -- |
| 77.05 | 0.411 | 8.69 | -0.25 | 1.45 | -- | -- | -- | -0.512 | 17.7 | -- | -- | -- | -- |
| 120.3 | 0.511 | 8.68 | -0.519 | -- | 1.52 | -- | -- | -0.651 | -- | 25.11 | 413 | -- | -- |
| 69.69 | 0.389 | 8.66 | -- | 1.49 | 0.429 | -- | -- | -0.395 | 17.6 | 31.77 | 5486 | -- | -- |
| 186.69 | 0.638 | 8.66 | -0.296 | -- | -- | -- | -- | -0.547 | -- | -- | -- | -- | -- |
| 78.69 | 0.415 | 8.68 | -- | 1.46 | -- | -- | -- | -0.484 | 17.7 | -- | -- | -- | -- |
| 127.73 | 0.526 | 8.67 | -- | -- | 1.44 | -- | -- | -0.583 | -- | 25.1 | 402 | -- | -- |
| 189 | 0.642 | 8.66 | -- | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.66 | radiation | 30 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 3 | 60.76 | radiation | 30 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 20 | 61.11 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 21 | 61.18 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 38 | 61.18 | radiation | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 40 | 61.29 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 20 |
| 41 | 61.38 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 42 | 61.39 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 65 | 61.42 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 68 | 61.43 | radiation | 40 | 1440 | > th | dose independent | sin | 13 | NA |
| 69 | 61.43 | radiation | 40 | 1440 | < th | dose independent | sin | 13 | NA |
| 82 | 61.53 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 86 | 61.54 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 92 | 61.54 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 93 | 61.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 94 | 61.55 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 9 |
| 97 | 61.56 | humidity | 70 | 1440 | > th | dose independent | sin | 12 | NA |
| 100 | 61.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 102 | 61.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 104 | 61.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 108 | 61.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 113 | 61.68 | humidity | 70 | 1440 | < th | dose independent | sin | 14 | NA |
| 120 | 61.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 147 | 61.74 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 149 | 61.74 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 191 | 61.83 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 195 | 61.85 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 212 | 61.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 213 | 61.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 225 | 61.90 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 257 | 61.92 | temperature | 30 | 1440 | > th | dose dependent | sin | 14 | NA |
| 268 | 61.97 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 270 | 61.98 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 280 | 62.01 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 281 | 62.01 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 301 | 62.04 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 336 | 62.09 | humidity | 60 | 1440 | > th | dose independent | sin | 17 | NA |
| 383 | 62.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 408 | 62.16 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 421 | 62.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 422 | 62.16 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 424 | 62.16 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 425 | 62.16 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 473 | 62.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 516 | 62.24 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 529 | 62.25 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 572 | 62.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 629 | 62.29 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 685 | 62.31 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 703 | 62.32 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 726 | 62.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 731 | 62.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 746 | 62.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 747 | 62.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 765 | 62.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 786 | 62.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 787 | 62.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 801 | 62.36 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 802 | 62.36 | radiation | 40 | 1440 | < th | dose dependent | sin | 12 | NA |
| 803 | 62.36 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 871 | 62.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |