Os06g0179800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os06g0179800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.55 | 0.498 | 8.37 | 1.38 | 1.11 | -0.281 | -0.583 | 3.83 | 0.682 | 1.86 | 20.7 | 1457 | -- | -- |
| 123.98 | 0.523 | 8.5 | 0.269 | 0.972 | -0.383 | -0.533 | -- | 0.407 | 1.82 | 21 | 5158 | -- | -- |
| 113.66 | 0.497 | 8.37 | 1.39 | 1.11 | -0.283 | -- | 3.82 | 0.684 | 1.89 | 20.63 | 1541 | -- | -- |
| 124.53 | 0.523 | 8.5 | 0.304 | 0.973 | -0.505 | -- | -- | 0.416 | 1.89 | 12.69 | 5894 | -- | -- |
| 150.48 | 0.574 | 8.38 | 1.11 | -- | -1.49 | -- | 3.72 | 0.754 | -- | 21.33 | 1544 | -- | -- |
| 126.23 | 0.527 | 8.51 | 0.193 | 1.12 | -- | -0.444 | -- | 0.343 | 1.91 | -- | -- | -- | -- |
| 126.99 | 0.528 | 8.51 | 0.206 | 1.12 | -- | -- | -- | 0.345 | 1.94 | -- | -- | -- | -- |
| 162.82 | 0.597 | 8.45 | 0.553 | -- | -1.65 | -- | -- | 0.591 | -- | 8.318 | 11823 | -- | -- |
| 126.74 | 0.527 | 8.51 | -- | 1.02 | -0.358 | -- | -- | 0.365 | 1.91 | 12.69 | 5894 | -- | -- |
| 202.16 | 0.664 | 8.5 | 0.252 | -- | -- | -- | -- | 0.371 | -- | -- | -- | -- | -- |
| 128.11 | 0.529 | 8.52 | -- | 1.12 | -- | -- | -- | 0.322 | 1.95 | -- | -- | -- | -- |
| 170.42 | 0.61 | 8.47 | -- | -- | -1.48 | -- | -- | 0.51 | -- | 8.318 | 11823 | -- | -- |
| 203.84 | 0.666 | 8.51 | -- | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.07 | wind | 1.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 2 | 104.38 | wind | 1.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 4 | 104.74 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 18 |
| 5 | 104.78 | wind | 1.0 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 6 | 104.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 7 | 104.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 8 | 104.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 9 | 104.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 14 | 105.13 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 18 | 105.27 | wind | 1.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 19 | 105.48 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 17 |
| 21 | 105.52 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 22 | 105.53 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 25 | 105.67 | wind | 1.0 | 43200 | < th | dose independent | rect. | 15 | 11 |
| 26 | 105.73 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 15 |
| 28 | 105.80 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 30 | 105.81 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 33 | 105.91 | wind | 1.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 37 | 105.93 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 43 | 106.04 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 46 | 106.09 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 58 | 106.28 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 61 | 106.32 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 62 | 106.33 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 73 | 106.43 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 74 | 106.43 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 77 | 106.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 78 | 106.50 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 84 | 106.53 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 89 | 106.58 | wind | 1.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 90 | 106.58 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 91 | 106.58 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 96 | 106.64 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 98 | 106.67 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 10 |
| 101 | 106.69 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 11 | 8 |
| 107 | 106.73 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 111 | 106.75 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 113 | 106.76 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 116 | 106.77 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 124 | 106.78 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 134 | 106.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 138 | 106.81 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 17 |
| 155 | 106.84 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 156 | 106.84 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 166 | 106.86 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 168 | 106.87 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 183 | 106.89 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 19 |
| 200 | 106.91 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 208 | 106.93 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 8 |
| 218 | 106.94 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 225 | 106.95 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 228 | 106.95 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 14 |
| 241 | 106.96 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 245 | 106.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 9 |
| 271 | 107.00 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 275 | 107.01 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 308 | 107.05 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 318 | 107.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 403 | 107.15 | wind | 3.0 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 404 | 107.15 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 414 | 107.16 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 415 | 107.16 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 416 | 107.16 | radiation | 1.0 | 43200 | < th | dose dependent | no | NA | NA |
| 442 | 107.17 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 455 | 107.18 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 475 | 107.19 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 509 | 107.21 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 514 | 107.21 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 559 | 107.24 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 570 | 107.25 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 600 | 107.27 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 602 | 107.27 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 607 | 107.27 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 626 | 107.28 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 628 | 107.28 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 15 | 20 |
| 641 | 107.29 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 647 | 107.30 | radiation | 1.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 649 | 107.30 | radiation | 1.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 664 | 107.31 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 844 | 107.35 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 864 | 107.36 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 893 | 107.38 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 18 |
| 915 | 107.39 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 8 | 10 |
| 935 | 107.39 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 979 | 107.42 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 984 | 107.43 | radiation | 1.0 | 43200 | < th | dose independent | no | NA | NA |