Os06g0179700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-binding protein phosphatase 2C.
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Os06g0179700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-binding protein phosphatase 2C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.28 | 0.294 | 10.1 | -0.234 | 1.49 | 1.12 | -0.3 | 1.11 | -0.288 | 10.4 | 23 | 245 | -- | -- |
| 40.68 | 0.297 | 10.1 | -0.116 | 1.48 | 0.92 | -0.397 | -- | -0.269 | 10.4 | 23.1 | 249 | -- | -- |
| 39.63 | 0.293 | 10.1 | -0.258 | 1.49 | 1.12 | -- | 1.19 | -0.294 | 10.5 | 22.9 | 230 | -- | -- |
| 41.31 | 0.299 | 10.1 | -0.131 | 1.48 | 0.914 | -- | -- | -0.269 | 10.4 | 23.15 | 251 | -- | -- |
| 136.37 | 0.544 | 10.2 | -0.449 | -- | 1.28 | -- | 1.09 | -0.269 | -- | 29.16 | 745 | -- | -- |
| 50.63 | 0.334 | 10.2 | -0.329 | 1.45 | -- | -0.376 | -- | -0.398 | 10.2 | -- | -- | -- | -- |
| 51.19 | 0.335 | 10.2 | -0.344 | 1.45 | -- | -- | -- | -0.399 | 10.2 | -- | -- | -- | -- |
| 130.99 | 0.533 | 10.1 | 0.105 | -- | 1.7 | -- | -- | -0.0652 | -- | 29.7 | 760 | -- | -- |
| 41.72 | 0.301 | 10.1 | -- | 1.48 | 0.963 | -- | -- | -0.248 | 10.4 | 23.18 | 251 | -- | -- |
| 178.8 | 0.625 | 10.2 | -0.365 | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
| 54.32 | 0.345 | 10.1 | -- | 1.45 | -- | -- | -- | -0.361 | 10.2 | -- | -- | -- | -- |
| 131.24 | 0.534 | 10.1 | -- | -- | 1.66 | -- | -- | -0.0829 | -- | 29.7 | 757 | -- | -- |
| 182.31 | 0.63 | 10.2 | -- | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 3 | 39.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 8 | 39.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 14 | 39.52 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 15 | 39.55 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 34 | 39.63 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 38 | 39.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 62 | 39.75 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 63 | 39.75 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 65 | 39.76 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 66 | 39.76 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 90 | 39.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 105 | 39.85 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 112 | 39.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 139 | 39.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 140 | 39.96 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 163 | 40.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 184 | 40.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 205 | 40.13 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 231 | 40.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 245 | 40.21 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 342 | 40.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 348 | 40.42 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 374 | 40.47 | temperature | 20 | 90 | > th | dose independent | sin | 9 | NA |
| 404 | 40.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 441 | 40.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 4 |
| 445 | 40.56 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 453 | 40.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 552 | 40.66 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 15 |
| 568 | 40.68 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 12 |
| 671 | 40.78 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 732 | 40.82 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 746 | 40.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 748 | 40.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 771 | 40.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 772 | 40.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 785 | 40.86 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 826 | 40.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 848 | 40.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 920 | 40.97 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 988 | 41.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 996 | 41.03 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 12 |