Os06g0179500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF247, plant family protein.
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Os06g0179500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF247, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.78 | 0.689 | 3.74 | -1.5 | 0.12 | -1.32 | -0.72 | 4.3 | -0.671 | 23.8 | 2.342 | 1272 | -- | -- |
| 232.11 | 0.71 | 3.82 | -1.62 | 0.153 | -0.962 | -1.12 | -- | -0.672 | 23.2 | 2.499 | 2376 | -- | -- |
| 216.7 | 0.686 | 3.73 | -1.45 | 0.0841 | -1.35 | -- | 4.41 | -0.662 | 0.0124 | 2.4 | 1206 | -- | -- |
| 236.57 | 0.716 | 3.83 | -1.54 | 0.183 | -1.08 | -- | -- | -0.708 | 2.01 | 2.51 | 2375 | -- | -- |
| 217.15 | 0.686 | 3.73 | -1.43 | -- | -1.38 | -- | 4.48 | -0.677 | -- | 2.4 | 1203 | -- | -- |
| 243.12 | 0.731 | 3.78 | -1.84 | 0.227 | -- | -1.26 | -- | -0.465 | 23 | -- | -- | -- | -- |
| 249.44 | 0.74 | 3.78 | -1.79 | 0.245 | -- | -- | -- | -0.463 | 0.393 | -- | -- | -- | -- |
| 238.49 | 0.719 | 3.84 | -1.54 | -- | -1.15 | -- | -- | -0.722 | -- | 2.746 | 2372 | -- | -- |
| 293.3 | 0.798 | 3.81 | -- | 0.279 | -1.61 | -- | -- | -0.786 | 2.31 | 2.501 | 2964 | -- | -- |
| 253.22 | 0.744 | 3.77 | -1.78 | -- | -- | -- | -- | -0.459 | -- | -- | -- | -- | -- |
| 334.17 | 0.855 | 3.73 | -- | 0.221 | -- | -- | -- | -0.263 | 24 | -- | -- | -- | -- |
| 293.23 | 0.798 | 3.84 | -- | -- | -1.83 | -- | -- | -0.736 | -- | 2.527 | 2375 | -- | -- |
| 337.24 | 0.857 | 3.73 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 207.10 | wind | 1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 4 | 208.23 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 6 | 208.98 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 7 |
| 10 | 209.71 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 17 |
| 11 | 209.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 19 |
| 15 | 209.86 | wind | 1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 18 | 209.91 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 12 |
| 27 | 210.13 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 38 | 210.52 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 40 | 210.57 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 19 |
| 45 | 210.69 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 50 | 210.76 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 61 | 211.01 | wind | 1 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 65 | 211.04 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 73 | 211.12 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 80 | 211.19 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 21 |
| 89 | 211.27 | wind | 1 | 14400 | < th | dose independent | sin | 3 | NA |
| 98 | 211.32 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 19 |
| 114 | 211.47 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 16 |
| 125 | 211.55 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 22 |
| 147 | 211.71 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 148 | 211.73 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 171 | 211.87 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 195 | 212.05 | wind | 1 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 197 | 212.06 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 204 | 212.09 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 19 |
| 210 | 212.12 | wind | 1 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 215 | 212.13 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 16 |
| 223 | 212.20 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 240 | 212.31 | wind | 1 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 256 | 212.36 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 22 |
| 261 | 212.40 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 273 | 212.46 | wind | 1 | 14400 | < th | dose dependent | rect. | 12 | 22 |
| 276 | 212.49 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 10 |
| 285 | 212.53 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 299 | 212.61 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 328 | 212.73 | wind | 1 | 14400 | > th | dose independent | sin | 4 | NA |
| 341 | 212.77 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 351 | 212.83 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 13 |
| 357 | 212.86 | wind | 3 | 4320 | < th | dose dependent | rect. | 20 | 12 |
| 386 | 212.98 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 22 |
| 388 | 212.98 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 417 | 213.10 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 420 | 213.12 | wind | 3 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 430 | 213.19 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 432 | 213.19 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 457 | 213.30 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 479 | 213.40 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 487 | 213.42 | wind | 3 | 1440 | < th | dose dependent | rect. | 22 | 17 |
| 515 | 213.51 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 550 | 213.62 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 560 | 213.65 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 585 | 213.73 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 624 | 213.84 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 678 | 214.02 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 702 | 214.11 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 712 | 214.14 | wind | 1 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 731 | 214.20 | wind | 1 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 750 | 214.26 | wind | 1 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 767 | 214.31 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 805 | 214.42 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 819 | 214.46 | wind | 3 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 863 | 214.58 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 875 | 214.64 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 883 | 214.67 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 910 | 214.73 | wind | 3 | 1440 | < th | dose dependent | sin | 6 | NA |
| 995 | 214.94 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 996 | 214.94 | wind | 3 | 4320 | < th | dose dependent | sin | 10 | NA |