Os06g0179400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0179400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.14 | 0.663 | 3.03 | -0.0608 | 0.32 | 0.795 | 0.655 | 0.833 | -0.0859 | 16.9 | 0.6001 | 245 | -- | -- |
| 199.38 | 0.658 | 3.04 | -0.0657 | 0.322 | 0.891 | 0.534 | -- | -0.0787 | 16.7 | 0.6 | 244 | -- | -- |
| 199.9 | 0.658 | 3.03 | -0.0566 | 0.33 | 0.755 | -- | 0.511 | -0.0871 | 16.1 | 0.6006 | 244 | -- | -- |
| 199.95 | 0.659 | 3.04 | -0.0601 | 0.319 | 0.823 | -- | -- | -0.0838 | 16.1 | 0.6 | 244 | -- | -- |
| 204.62 | 0.666 | 3.03 | -0.0312 | -- | 0.462 | -- | 0.641 | -0.111 | -- | 0.6 | 244 | -- | -- |
| 204.92 | 0.671 | 3.04 | 0.0332 | 0.208 | -- | 0.0262 | -- | -0.135 | 14.9 | -- | -- | -- | -- |
| 204.92 | 0.67 | 3.04 | 0.0338 | 0.208 | -- | -- | -- | -0.135 | 14.9 | -- | -- | -- | -- |
| 204.76 | 0.666 | 3.04 | -0.042 | -- | 0.554 | -- | -- | -0.107 | -- | 0.7651 | 244 | -- | -- |
| 200.04 | 0.659 | 3.03 | -- | 0.315 | 0.793 | -- | -- | -0.0801 | 16 | 0.6 | 244 | -- | -- |
| 207.42 | 0.673 | 3.05 | 0.0249 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 204.95 | 0.67 | 3.05 | -- | 0.208 | -- | -- | -- | -0.139 | 14.9 | -- | -- | -- | -- |
| 204.8 | 0.667 | 3.04 | -- | -- | 0.541 | -- | -- | -0.104 | -- | 0.7694 | 244 | -- | -- |
| 207.44 | 0.672 | 3.05 | -- | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.43 | temperature | 30 | 10 | > th | dose independent | rect. | 13 | 5 |
| 2 | 185.53 | temperature | 30 | 10 | > th | dose independent | rect. | 13 | 21 |
| 4 | 186.27 | wind | 1 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 25 | 187.31 | wind | 1 | 90 | < th | dose independent | rect. | 13 | 1 |
| 30 | 188.89 | temperature | 30 | 10 | > th | dose independent | rect. | 13 | 3 |
| 34 | 191.04 | temperature | 30 | 10 | > th | dose independent | rect. | 14 | 1 |
| 39 | 193.68 | humidity | 60 | 10 | < th | dose independent | rect. | 17 | 1 |
| 43 | 194.07 | humidity | 90 | 30 | < th | dose independent | rect. | 7 | 1 |
| 50 | 194.30 | wind | 1 | 30 | < th | dose dependent | rect. | 10 | 5 |
| 51 | 194.31 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 1 |
| 61 | 194.31 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 74 | 194.48 | humidity | 60 | 90 | < th | dose dependent | rect. | 17 | 1 |
| 317 | 195.69 | temperature | 30 | 10 | > th | dose independent | sin | 13 | NA |
| 318 | 195.86 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 320 | 195.88 | radiation | 10 | 10 | < th | dose independent | rect. | 12 | 1 |
| 351 | 196.24 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 392 | 196.36 | radiation | 10 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 394 | 196.43 | temperature | 30 | 10 | < th | dose independent | sin | 12 | NA |
| 402 | 196.73 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 7 | 1 |
| 404 | 196.79 | radiation | 10 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 418 | 196.81 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 457 | 197.09 | wind | 9 | 30 | > th | dose dependent | sin | 6 | NA |
| 466 | 197.12 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 1 |
| 472 | 197.18 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 478 | 197.26 | wind | 9 | 30 | > th | dose dependent | rect. | 18 | 18 |
| 494 | 197.54 | humidity | 90 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 512 | 197.82 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 549 | 197.90 | wind | 9 | 30 | < th | dose independent | sin | 5 | NA |
| 558 | 198.02 | wind | 1 | 270 | < th | dose dependent | rect. | 12 | 17 |
| 559 | 198.03 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 12 |
| 565 | 198.05 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 10 |
| 566 | 198.05 | wind | 1 | 270 | < th | dose dependent | rect. | 10 | 19 |
| 567 | 198.07 | wind | 9 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 568 | 198.09 | temperature | 30 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 574 | 198.12 | wind | 1 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 576 | 198.14 | wind | 5 | 30 | < th | dose independent | rect. | 13 | 20 |
| 593 | 198.21 | wind | 1 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 609 | 198.27 | temperature | 30 | 30 | > th | dose independent | rect. | 17 | 1 |
| 610 | 198.27 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 22 |
| 612 | 198.28 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 1 |
| 659 | 198.40 | wind | 5 | 30 | < th | dose independent | rect. | 12 | 23 |
| 669 | 198.47 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 23 |
| 711 | 198.64 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 736 | 198.71 | wind | 9 | 30 | < th | dose dependent | rect. | 12 | 23 |
| 744 | 198.75 | temperature | 30 | 90 | < th | dose independent | rect. | 14 | 22 |
| 745 | 198.75 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 747 | 198.77 | wind | 9 | 30 | > th | dose independent | sin | 5 | NA |
| 749 | 198.79 | radiation | 40 | 10 | < th | dose independent | rect. | 13 | 1 |
| 754 | 198.81 | wind | 1 | 270 | > th | dose independent | rect. | 6 | 23 |
| 760 | 198.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 5 |
| 762 | 198.84 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 3 |
| 783 | 198.93 | wind | 1 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 830 | 199.03 | temperature | 30 | 90 | > th | dose dependent | rect. | 14 | 20 |
| 837 | 199.06 | temperature | 10 | 90 | > th | dose dependent | rect. | 12 | 11 |
| 842 | 199.08 | wind | 1 | 270 | < th | dose independent | rect. | 10 | 21 |
| 843 | 199.08 | temperature | 30 | 30 | > th | dose dependent | sin | 12 | NA |
| 845 | 199.08 | temperature | 30 | 90 | > th | dose dependent | rect. | 14 | 4 |
| 860 | 199.12 | wind | 1 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 935 | 199.24 | wind | 1 | 270 | < th | dose independent | rect. | 12 | 19 |
| 945 | 199.27 | wind | 1 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 952 | 199.28 | radiation | 1 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 962 | 199.31 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 13 |
| 971 | 199.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 972 | 199.32 | humidity | 90 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 975 | 199.34 | humidity | 50 | 90 | > th | dose independent | rect. | 8 | 23 |
| 988 | 199.36 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 1 |
| 992 | 199.37 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 11 |