Os06g0179200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nodulin-like protein.
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Os06g0179200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nodulin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.39 | 0.439 | 8.87 | -0.98 | 2.38 | 2.25 | 1.32 | -0.179 | -0.385 | 23.4 | 3.219 | 149 | 6.55 | 22.6 |
| 87.35 | 0.435 | 8.87 | -0.961 | 2.38 | 2.24 | 1.35 | -- | -0.386 | 23.4 | 2.64 | 149 | 6.55 | 22.6 |
| 94.37 | 0.452 | 8.89 | -1.1 | 2.4 | 2.24 | -- | -0.758 | -0.426 | 23.3 | 1.346 | 150 | 6.47 | 22.7 |
| 94.82 | 0.454 | 8.88 | -1.01 | 2.38 | 2.18 | -- | -- | -0.379 | 23.3 | 0.2727 | 149 | 6.47 | 22.7 |
| 113.46 | 0.496 | 8.82 | -0.973 | -- | 3.18 | -- | 0.562 | -0.375 | -- | -24.07 | 633 | 7.02 | 19.8 |
| 157.98 | 0.589 | 8.84 | -0.551 | 2.47 | -- | 1.15 | -- | -0.202 | 21.9 | -- | -- | -- | -- |
| 163.05 | 0.598 | 8.84 | -0.595 | 2.47 | -- | -- | -- | -0.203 | 21.9 | -- | -- | -- | -- |
| 114.93 | 0.499 | 8.81 | -0.943 | -- | 3.13 | -- | -- | -0.37 | -- | -33.29 | 620 | 7.03 | 20.2 |
| 119.3 | 0.509 | 8.85 | -- | 2.31 | 2.08 | -- | -- | -0.258 | 23.1 | 0.4211 | 133 | 6.7 | 22.5 |
| 527.92 | 1.07 | 8.78 | -0.568 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 172.37 | 0.614 | 8.83 | -- | 2.47 | -- | -- | -- | -0.137 | 21.9 | -- | -- | -- | -- |
| 137.76 | 0.547 | 8.81 | -- | -- | 3.02 | -- | -- | -0.246 | -- | -42.07 | 615 | 7.02 | 20 |
| 536.42 | 1.08 | 8.76 | -- | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.20 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 12 | 101.75 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 21 | 103.19 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 8 |
| 41 | 106.20 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 44 | 106.51 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 68 | 108.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 69 | 108.15 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 83 | 109.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 104 | 110.84 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 8 |
| 107 | 111.00 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 6 |
| 128 | 112.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 136 | 112.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 138 | 112.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 139 | 112.88 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 18 |
| 141 | 112.88 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 143 | 112.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 158 | 113.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 13 |
| 175 | 113.71 | humidity | 70 | 30 | > th | dose independent | rect. | 5 | 21 |
| 185 | 113.81 | temperature | 25 | 1440 | > th | dose dependent | sin | 7 | NA |
| 198 | 113.99 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 202 | 114.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 218 | 114.23 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 219 | 114.24 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 262 | 114.59 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 278 | 114.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 313 | 114.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 333 | 115.15 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 334 | 115.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 356 | 115.33 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 381 | 115.49 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 389 | 115.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 20 |
| 434 | 115.68 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 21 |
| 443 | 115.71 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 18 |
| 448 | 115.72 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 617 | 116.54 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 675 | 117.03 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 6 |
| 688 | 117.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 695 | 117.17 | wind | 9 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 710 | 117.24 | humidity | 60 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 809 | 117.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 815 | 117.57 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 14 |
| 816 | 117.57 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 21 |
| 826 | 117.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 879 | 117.70 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 4 |
| 925 | 117.79 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 931 | 117.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 991 | 117.91 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 993 | 117.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 996 | 117.92 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 1000 | 117.93 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |