Os06g0176800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0176800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	12.9	(0.027)	R²	:	0.664
β₁	:	-1.6	(0.103)	R²_dD	:	0.205	R²_D	:	-0.0632
β₂	:	1.1	(0.0652)	R²_dC	:	0.212	R²_C	:	0.107
β₃	:	-0.774	(0.0868)	R²_dE	:	0.0667	R²_E	:	-0.179
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-1.31	(0.0593)	R²_dN8	:	0.515	R²_N8	:	0.237
σ	:	0.502
deviance	:	116.01
__

_____

C
peak time of C	:	14.1
E
wheather	:	atmosphere
threshold	:	1007
memory length	:	10021
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
114.67	0.503	12.9	-1.49	1.11	-0.767	-0.549	-0.331	-1.28	14.1	1007	10036	--	--
114.93	0.499	12.9	-1.58	1.11	-0.768	-0.58	--	-1.3	14.1	1006	10020	--	--
115.77	0.501	12.9	-1.51	1.11	-0.777	--	-0.338	-1.29	14.1	1007	10025	--	--
116.01	0.502	12.9	-1.6	1.1	-0.774	--	--	-1.31	14.1	1007	10021	--	--
188.21	0.639	12.9	-1.57	--	-0.774	--	-0.132	-1.34	--	1006	11596	--	--
134.79	0.544	12.9	-1.33	1.09	--	-0.637	--	-1.17	14.1	--	--	--	--
136.28	0.547	12.9	-1.34	1.08	--	--	--	-1.17	14	--	--	--	--
188.23	0.639	12.9	-1.62	--	-0.776	--	--	-1.35	--	1006	11593	--	--
177.51	0.621	12.8	--	1.12	-0.438	--	--	-1.05	14.1	1004	10780	--	--
206.75	0.672	12.9	-1.39	--	--	--	--	-1.2	--	--	--	--	--
183.9	0.634	12.8	--	1.11	--	--	--	-1.02	14	--	--	--	--
251.99	0.739	12.8	--	--	-0.437	--	--	-1.08	--	1004	11654	--	--
257.64	0.749	12.8	--	--	--	--	--	-1.04	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	110.07	wind	1.0	30	> th	dose independent	rect.	1	5
2	110.21	temperature	30.0	30	< th	dose dependent	rect.	1	5
4	110.61	atmosphere	1015.0	30	< th	dose dependent	rect.	1	5
7	110.81	humidity	60.0	30	> th	dose dependent	rect.	1	5
12	111.10	radiation	1.0	90	< th	dose independent	rect.	1	5
14	111.17	humidity	80.0	30	> th	dose independent	rect.	1	5
15	111.20	atmosphere	1015.0	270	< th	dose dependent	rect.	1	1
17	111.34	radiation	10.0	90	< th	dose dependent	rect.	1	5
19	111.42	wind	9.0	4320	< th	dose independent	rect.	2	5
20	111.44	radiation	1.0	720	< th	dose dependent	rect.	14	5
21	111.46	humidity	50.0	30	> th	dose independent	rect.	6	19
36	111.67	temperature	10.0	1440	> th	dose independent	rect.	2	5
39	111.67	temperature	30.0	1440	< th	dose independent	rect.	2	5
43	111.67	humidity	50.0	1440	> th	dose independent	rect.	2	5
48	111.67	atmosphere	995.0	1440	> th	dose independent	rect.	2	5
49	111.67	radiation	40.0	1440	< th	dose independent	rect.	2	5
53	111.67	temperature	10.0	1440	> th	dose independent	rect.	7	19
58	111.78	radiation	1.0	90	< th	dose independent	rect.	1	11
64	111.82	temperature	30.0	270	< th	dose dependent	rect.	1	2
70	111.86	precipitation	0.1	30	< th	dose independent	rect.	6	19
72	111.86	precipitation	0.1	30	< th	dose dependent	rect.	6	19
73	111.89	temperature	10.0	30	> th	dose independent	rect.	1	5
75	111.89	temperature	30.0	30	< th	dose independent	rect.	1	5
76	111.89	humidity	50.0	30	> th	dose independent	rect.	1	5
79	111.89	atmosphere	995.0	30	> th	dose independent	rect.	1	5
80	111.89	atmosphere	1010.0	30	< th	dose independent	rect.	1	5
82	111.89	radiation	20.0	30	< th	dose independent	rect.	1	5
85	111.89	temperature	10.0	30	> th	dose independent	rect.	6	19
86	111.91	radiation	1.0	90	< th	dose dependent	rect.	1	11
87	111.92	wind	9.0	30	< th	dose independent	rect.	1	5
109	112.03	atmosphere	995.0	30	> th	dose independent	rect.	6	19
111	112.05	wind	9.0	30	< th	dose independent	rect.	6	19
145	112.34	wind	1.0	30	> th	dose independent	rect.	6	19
149	112.35	precipitation	0.1	270	< th	dose independent	rect.	2	23
150	112.35	precipitation	0.1	270	< th	dose dependent	rect.	2	23
161	112.50	radiation	1.0	720	< th	dose independent	rect.	14	6
162	112.53	temperature	10.0	30	> th	dose dependent	rect.	6	19
164	112.59	radiation	1.0	720	< th	dose dependent	rect.	14	14
175	112.77	radiation	1.0	90	< th	dose independent	rect.	1	14
179	112.85	precipitation	0.1	90	< th	dose independent	rect.	1	5
181	112.85	precipitation	0.1	90	< th	dose dependent	rect.	1	5
185	112.89	radiation	1.0	720	< th	dose independent	rect.	14	14
188	112.90	radiation	1.0	90	< th	dose independent	rect.	1	16
189	112.90	radiation	1.0	90	< th	dose dependent	rect.	1	14
193	112.93	radiation	1.0	90	< th	dose dependent	rect.	1	18
203	113.02	precipitation	0.1	270	< th	dose independent	rect.	4	20
204	113.02	precipitation	0.1	270	< th	dose dependent	rect.	4	20
212	113.11	atmosphere	1015.0	30	< th	dose independent	rect.	6	19
213	113.12	radiation	1.0	90	< th	dose dependent	rect.	1	16
218	113.18	humidity	50.0	270	> th	dose dependent	rect.	1	1
230	113.19	temperature	10.0	270	> th	dose independent	rect.	4	20
246	113.26	humidity	50.0	270	> th	dose dependent	rect.	23	6
247	113.27	humidity	80.0	270	> th	dose independent	rect.	1	1
277	113.37	radiation	1.0	720	< th	dose dependent	rect.	14	16
298	113.39	radiation	1.0	90	< th	dose independent	rect.	1	18
299	113.41	radiation	1.0	90	> th	dose independent	sin	3	NA
305	113.44	precipitation	0.1	270	< th	dose independent	rect.	1	2
306	113.44	precipitation	0.1	270	< th	dose dependent	rect.	1	2
309	113.45	humidity	90.0	270	< th	dose independent	rect.	18	6
320	113.62	wind	9.0	270	< th	dose independent	rect.	4	20
340	113.72	radiation	10.0	270	< th	dose independent	rect.	5	19
386	113.80	wind	1.0	270	< th	dose dependent	rect.	24	1
421	113.95	radiation	1.0	270	< th	dose independent	rect.	23	7
433	114.01	humidity	90.0	270	< th	dose independent	rect.	20	3
439	114.04	radiation	1.0	720	< th	dose dependent	rect.	8	11
441	114.05	radiation	1.0	720	< th	dose dependent	rect.	10	9
460	114.14	radiation	1.0	90	< th	dose dependent	sin	3	NA
486	114.34	atmosphere	995.0	270	> th	dose independent	rect.	4	20
487	114.37	atmosphere	1010.0	4320	> th	dose dependent	rect.	7	1
503	114.45	humidity	90.0	90	< th	dose independent	rect.	20	17
505	114.45	radiation	1.0	270	< th	dose dependent	rect.	22	22
533	114.58	radiation	1.0	270	< th	dose dependent	rect.	23	18
556	114.74	radiation	1.0	270	< th	dose independent	rect.	23	11
562	114.77	wind	1.0	270	> th	dose dependent	rect.	1	2
578	114.85	radiation	1.0	90	< th	dose independent	sin	3	NA
590	114.90	humidity	70.0	30	> th	dose dependent	rect.	1	8
655	115.13	radiation	1.0	720	> th	dose independent	rect.	12	19
692	115.28	humidity	50.0	270	> th	dose independent	rect.	4	20
699	115.31	radiation	40.0	270	< th	dose dependent	rect.	5	19
703	115.35	radiation	1.0	720	< th	dose independent	rect.	10	10
715	115.41	radiation	1.0	270	< th	dose independent	rect.	23	18
745	115.51	wind	1.0	270	> th	dose independent	rect.	17	7
747	115.52	radiation	20.0	270	< th	dose dependent	rect.	5	19
751	115.54	wind	1.0	10	> th	dose dependent	rect.	2	4
754	115.55	radiation	40.0	270	< th	dose independent	rect.	5	19
764	115.57	humidity	50.0	270	> th	dose independent	rect.	4	9
789	115.65	temperature	10.0	30	> th	dose dependent	rect.	1	5
793	115.66	radiation	1.0	90	> th	dose independent	rect.	18	21
843	115.74	wind	1.0	90	> th	dose dependent	rect.	3	2
849	115.75	radiation	1.0	720	< th	dose dependent	sin	13	NA
856	115.78	radiation	1.0	270	< th	dose independent	rect.	22	21
861	115.81	precipitation	0.1	270	< th	dose independent	rect.	4	9
863	115.81	precipitation	0.1	270	< th	dose dependent	rect.	4	9
884	115.90	radiation	1.0	720	< th	dose dependent	rect.	10	18
940	115.99	wind	9.0	270	< th	dose independent	rect.	4	9
941	115.99	temperature	10.0	270	> th	dose independent	rect.	4	9
942	115.99	atmosphere	995.0	270	> th	dose independent	rect.	4	9
943	115.99	atmosphere	1015.0	270	< th	dose independent	rect.	4	9
944	115.99	temperature	10.0	270	> th	dose independent	rect.	13	15
947	115.99	radiation	1.0	720	< th	dose independent	rect.	10	18
976	116.11	precipitation	0.1	270	< th	dose independent	rect.	17	7
978	116.11	precipitation	0.1	270	< th	dose dependent	rect.	17	7
997	116.21	wind	9.0	270	< th	dose independent	rect.	17	7