Os06g0176200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycosyl transferase, family 31 protein.
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Os06g0176200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycosyl transferase, family 31 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.99 | 0.23 | 11.6 | -1.75 | 0.74 | -0.638 | -0.0706 | 2.41 | -1.27 | 3.96 | 29.5 | 1716 | -- | -- |
| 27.38 | 0.244 | 11.5 | -1.33 | 0.691 | -0.948 | 0.0451 | -- | -1.12 | 3.85 | 20.27 | 3118 | -- | -- |
| 24.01 | 0.228 | 11.6 | -1.75 | 0.74 | -0.637 | -- | 2.41 | -1.27 | 3.96 | 29.5 | 1715 | -- | -- |
| 27.27 | 0.243 | 11.5 | -1.39 | 0.706 | -1.02 | -- | -- | -1.13 | 3.86 | 20.35 | 3140 | -- | -- |
| 49.3 | 0.327 | 11.6 | -1.84 | -- | -0.736 | -- | 2.39 | -1.27 | -- | 39.02 | 2598 | -- | -- |
| 37.47 | 0.287 | 11.5 | -0.979 | 0.721 | -- | -0.043 | -- | -0.973 | 3.89 | -- | -- | -- | -- |
| 37.47 | 0.287 | 11.5 | -0.978 | 0.721 | -- | -- | -- | -0.973 | 3.9 | -- | -- | -- | -- |
| 53.42 | 0.34 | 11.6 | -1.33 | -- | -0.84 | -- | -- | -1.16 | -- | 25.23 | 2637 | -- | -- |
| 61.45 | 0.367 | 11.5 | -- | 0.782 | -0.282 | -- | -- | -0.915 | 3.71 | 28.4 | 399 | -- | -- |
| 65.98 | 0.38 | 11.5 | -0.949 | -- | -- | -- | -- | -0.954 | -- | -- | -- | -- | -- |
| 62.7 | 0.37 | 11.5 | -- | 0.702 | -- | -- | -- | -0.864 | 3.91 | -- | -- | -- | -- |
| 85.42 | 0.43 | 11.5 | -- | -- | 0.526 | -- | -- | -0.791 | -- | 39.42 | 151 | -- | -- |
| 89.71 | 0.442 | 11.5 | -- | -- | -- | -- | -- | -0.849 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 4 | 23.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 28 | 23.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 29 | 23.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 34 | 23.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 71 | 23.81 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 99 | 23.86 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 242 | 24.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 15 |
| 344 | 24.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 387 | 24.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 403 | 24.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 437 | 24.20 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 489 | 24.23 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 561 | 24.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 563 | 24.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 581 | 24.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 605 | 24.28 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 673 | 24.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 692 | 24.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 702 | 24.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 724 | 24.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 782 | 24.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 13 |
| 862 | 24.42 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 878 | 24.43 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 976 | 24.49 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 6 |