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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0175400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BSD domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0207) R2 : 0.0105
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0959 (0.0436) R2dN8 : 0.0136 R2N8 : 0.0105
σ : 0.39
deviance : 69.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.77 0.387 2.98 0.0827 0.123 -0.0827 0.0824 0.748 0.132 7.04 40.13 754 -- --
68.43 0.388 2.99 0.0147 0.159 -0.0623 -0.159 -- 0.0953 7.04 49.36 790 -- --
67.79 0.383 2.98 0.0816 0.121 -0.0843 -- 0.705 0.131 6.98 40.12 754 -- --
68.47 0.385 2.99 0.0137 0.156 -0.0721 -- -- 0.101 6.88 49.76 1622 -- --
68.29 0.385 2.98 0.122 -- -0.15 -- 0.704 0.165 -- 40.69 755 -- --
68.52 0.388 3 0.0183 0.157 -- -0.17 -- 0.0945 6.69 -- -- -- --
68.59 0.388 2.99 0.0159 0.156 -- -- -- 0.0951 6.86 -- -- -- --
68.93 0.387 2.99 0.0425 -- -0.156 -- -- 0.131 -- 46 790 -- --
68.47 0.385 2.99 -- 0.155 -0.0769 -- -- 0.103 6.96 49.75 1622 -- --
69.87 0.391 3 0.0193 -- -- -- -- 0.0981 -- -- -- -- --
68.6 0.387 3 -- 0.156 -- -- -- 0.0933 6.86 -- -- -- --
68.92 0.387 2.99 -- -- -0.146 -- -- 0.119 -- 46.05 789 -- --
69.87 0.39 3 -- -- -- -- -- 0.0959 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.30 temperature 25.0 30 > th dose independent rect. 4 1
4 61.73 temperature 25.0 90 > th dose dependent rect. 4 1
6 62.25 wind 1.0 30 > th dose dependent rect. 4 1
7 62.38 humidity 90.0 10 < th dose independent rect. 4 1
11 64.56 wind 1.0 30 > th dose independent rect. 4 1
12 64.72 temperature 25.0 270 > th dose independent rect. 1 1
13 64.95 atmosphere 1005.0 10 > th dose dependent rect. 2 3
15 65.02 temperature 25.0 90 > th dose independent rect. 1 3
17 65.18 temperature 25.0 90 > th dose dependent rect. 2 2
20 65.36 atmosphere 1005.0 270 > th dose dependent rect. 1 2
21 65.37 atmosphere 1000.0 30 > th dose independent rect. 3 23
27 65.56 radiation 1.0 4320 < th dose dependent rect. 3 1
30 65.59 wind 9.0 1440 < th dose independent rect. 3 1
31 65.59 temperature 20.0 30 > th dose independent rect. 2 1
33 65.59 temperature 10.0 1440 > th dose independent rect. 3 1
36 65.59 temperature 30.0 1440 < th dose independent rect. 3 1
40 65.59 humidity 50.0 1440 > th dose independent rect. 3 1
49 65.59 atmosphere 995.0 1440 > th dose independent rect. 3 1
50 65.59 radiation 1.0 1440 < th dose independent rect. 3 1
70 65.59 temperature 10.0 1440 > th dose independent rect. 4 23
91 65.60 atmosphere 1005.0 30 > th dose independent rect. 2 1
97 65.61 wind 3.0 30 < th dose independent rect. 2 1
103 65.62 humidity 90.0 30 > th dose independent rect. 2 1
104 65.62 wind 3.0 30 < th dose dependent rect. 2 1
108 65.62 humidity 80.0 30 > th dose dependent rect. 2 1
111 65.63 temperature 10.0 30 > th dose independent rect. 2 1
114 65.63 temperature 30.0 30 < th dose independent rect. 2 1
115 65.63 humidity 50.0 30 > th dose independent rect. 2 1
120 65.63 atmosphere 1010.0 30 < th dose independent rect. 2 1
122 65.63 radiation 1.0 30 < th dose independent rect. 2 1
127 65.63 precipitation 0.1 30 < th dose independent rect. 2 1
128 65.63 temperature 10.0 30 > th dose independent rect. 3 23
129 65.63 humidity 50.0 30 > th dose dependent rect. 2 1
132 65.63 radiation 1.0 30 < th dose dependent rect. 2 1
137 65.63 precipitation 0.1 30 < th dose dependent rect. 2 1
146 65.68 atmosphere 1015.0 30 < th dose dependent rect. 2 1
149 65.71 wind 1.0 30 > th dose independent rect. 2 1
150 65.71 temperature 30.0 30 < th dose dependent rect. 2 1
177 65.83 precipitation 0.1 30 < th dose independent rect. 3 23
180 65.83 precipitation 0.1 30 < th dose dependent rect. 3 23
227 66.13 wind 9.0 30 < th dose independent rect. 3 23
234 66.20 temperature 25.0 10 > th dose independent rect. 2 3
235 66.21 humidity 90.0 270 < th dose independent rect. 1 1
242 66.26 humidity 50.0 30 > th dose independent rect. 3 23
291 66.57 atmosphere 1005.0 30 > th dose dependent rect. 4 1
293 66.59 temperature 20.0 10 > th dose dependent rect. 2 3
296 66.62 atmosphere 1005.0 10 > th dose independent rect. 2 3
298 66.63 atmosphere 1000.0 30 > th dose independent rect. 5 21
336 66.87 atmosphere 1000.0 10 > th dose independent rect. 14 12
345 66.88 wind 3.0 30 < th dose dependent rect. 2 3
347 66.89 wind 3.0 30 < th dose independent rect. 2 3
356 66.91 temperature 30.0 30 < th dose independent rect. 3 23
366 66.95 temperature 10.0 720 > th dose dependent rect. 2 1
374 66.97 atmosphere 995.0 30 > th dose dependent rect. 14 12
408 67.05 humidity 60.0 10 > th dose independent rect. 14 12
410 67.05 radiation 10.0 270 < th dose dependent rect. 11 1
412 67.05 wind 3.0 30 < th dose dependent rect. 2 6
415 67.07 atmosphere 995.0 720 > th dose independent rect. 14 1
424 67.08 atmosphere 995.0 30 > th dose dependent rect. 5 21
425 67.09 precipitation 0.1 10 < th dose independent rect. 2 3
430 67.09 precipitation 0.1 10 < th dose dependent rect. 2 3
437 67.10 humidity 50.0 10 > th dose independent rect. 2 12
442 67.11 temperature 10.0 10 > th dose independent rect. 2 3
444 67.11 temperature 30.0 10 < th dose independent rect. 2 3
445 67.11 humidity 50.0 10 > th dose independent rect. 2 3
450 67.11 atmosphere 1010.0 10 < th dose independent rect. 2 3
452 67.11 radiation 1.0 10 < th dose independent rect. 2 3
458 67.11 temperature 10.0 10 > th dose independent rect. 5 21
460 67.11 radiation 10.0 10 < th dose dependent rect. 2 3
480 67.12 radiation 40.0 30 < th dose independent rect. 14 12
482 67.12 precipitation 0.1 10 < th dose independent rect. 5 21
490 67.12 radiation 1.0 10 < th dose dependent rect. 2 12
493 67.12 precipitation 0.1 10 < th dose dependent rect. 5 21
495 67.13 atmosphere 1000.0 10 > th dose independent rect. 16 10
496 67.13 humidity 80.0 4320 < th dose dependent rect. 1 1
502 67.14 humidity 50.0 30 > th dose independent rect. 5 21
508 67.15 atmosphere 995.0 720 > th dose independent rect. 3 23
515 67.17 precipitation 0.1 1440 > th dose independent rect. 12 1
518 67.17 wind 9.0 30 < th dose independent rect. 5 21
519 67.17 atmosphere 1015.0 30 < th dose independent rect. 3 23
520 67.17 precipitation 0.1 1440 > th dose dependent rect. 12 1
529 67.18 radiation 1.0 10 < th dose independent rect. 2 14
530 67.18 humidity 90.0 10 < th dose dependent rect. 4 1
538 67.19 radiation 1.0 10 < th dose independent rect. 2 12
549 67.20 wind 9.0 10 < th dose independent rect. 2 12
550 67.20 wind 9.0 10 < th dose independent rect. 14 12
552 67.20 precipitation 0.1 720 < th dose independent rect. 15 23
554 67.20 wind 3.0 30 < th dose dependent rect. 2 11
555 67.20 precipitation 0.1 720 < th dose dependent rect. 15 23
556 67.21 temperature 25.0 1440 < th dose independent rect. 1 1
560 67.21 precipitation 0.1 10 < th dose independent rect. 2 12
563 67.21 precipitation 0.1 10 < th dose dependent rect. 2 12
573 67.23 temperature 10.0 10 > th dose independent rect. 2 12
575 67.23 temperature 10.0 10 > th dose independent rect. 14 12
576 67.23 atmosphere 995.0 10 > th dose independent rect. 2 12
577 67.23 atmosphere 1015.0 10 < th dose independent rect. 2 12
578 67.23 precipitation 0.1 10 < th dose independent rect. 14 12
589 67.23 precipitation 0.1 10 < th dose dependent rect. 14 12
601 67.25 radiation 1.0 720 > th dose independent rect. 14 1
616 67.27 precipitation 0.1 720 < th dose independent rect. 2 1
628 67.27 precipitation 0.1 720 < th dose dependent rect. 2 1
648 67.28 precipitation 0.1 720 < th dose independent rect. 14 1
651 67.28 temperature 30.0 10 < th dose independent rect. 14 12
662 67.28 precipitation 0.1 720 < th dose dependent rect. 14 1
664 67.28 radiation 10.0 90 < th dose dependent rect. 10 3
672 67.29 wind 1.0 720 > th dose independent rect. 14 1
673 67.29 temperature 10.0 720 > th dose independent rect. 14 1
674 67.29 atmosphere 1015.0 720 < th dose independent rect. 14 1
683 67.29 temperature 10.0 1440 > th dose independent rect. 3 12
686 67.29 temperature 10.0 1440 > th dose independent rect. 15 12
689 67.29 temperature 30.0 30 < th dose independent rect. 5 21
690 67.29 temperature 10.0 720 > th dose independent rect. 15 23
694 67.30 wind 1.0 1440 > th dose independent rect. 17 1
695 67.30 wind 9.0 720 < th dose independent rect. 14 1
696 67.30 wind 1.0 1440 < th dose independent rect. 17 1
703 67.30 atmosphere 995.0 30 > th dose dependent rect. 3 23
704 67.31 wind 1.0 30 < th dose independent rect. 10 1
705 67.31 temperature 10.0 1440 > th dose independent rect. 11 1
709 67.31 atmosphere 995.0 1440 > th dose independent rect. 11 1
712 67.31 precipitation 0.1 1440 < th dose independent rect. 11 1
713 67.31 temperature 10.0 1440 > th dose independent rect. 12 23
716 67.31 wind 1.0 30 < th dose dependent rect. 10 1
717 67.31 atmosphere 995.0 720 > th dose dependent rect. 14 1
718 67.31 precipitation 0.1 1440 < th dose dependent rect. 11 1
719 67.31 humidity 50.0 10 > th dose dependent rect. 2 3
728 67.32 temperature 10.0 720 > th dose dependent rect. 14 1
762 67.33 temperature 25.0 720 > th dose dependent rect. 4 4
770 67.34 humidity 50.0 10 > th dose independent rect. 2 14
773 67.34 wind 1.0 1440 < th dose dependent rect. 17 1
778 67.35 humidity 80.0 4320 < th dose independent rect. 1 1
779 67.35 radiation 10.0 10 > th dose independent rect. 6 1
784 67.35 wind 9.0 1440 < th dose independent rect. 3 3
785 67.35 temperature 10.0 1440 > th dose independent rect. 3 3
788 67.35 temperature 30.0 1440 < th dose independent rect. 3 3
792 67.35 humidity 50.0 1440 > th dose independent rect. 3 3
801 67.35 atmosphere 995.0 1440 > th dose independent rect. 3 3
804 67.35 radiation 20.0 1440 < th dose independent rect. 3 3
827 67.35 atmosphere 995.0 720 > th dose independent rect. 7 8
835 67.35 radiation 10.0 10 < th dose independent rect. 16 10
841 67.35 wind 1.0 10 < th dose independent rect. 14 13
846 67.35 atmosphere 995.0 720 > th dose independent rect. 21 18
847 67.35 wind 1.0 30 > th dose independent rect. 5 21
848 67.35 temperature 10.0 1440 > th dose independent rect. 6 21
852 67.35 radiation 10.0 10 > th dose dependent rect. 6 1
874 67.35 atmosphere 995.0 30 > th dose dependent rect. 16 10
877 67.35 radiation 20.0 10 < th dose dependent rect. 16 10
883 67.35 radiation 40.0 10 < th dose dependent rect. 14 12
898 67.36 wind 1.0 30 > th dose independent rect. 14 12
926 67.38 wind 9.0 10 < th dose independent rect. 16 10
927 67.38 humidity 50.0 10 > th dose independent rect. 16 10
930 67.38 atmosphere 1000.0 10 > th dose independent rect. 8 18
933 67.38 wind 1.0 10 > th dose independent rect. 5 23
936 67.38 wind 9.0 30 < th dose dependent rect. 2 12
956 67.39 precipitation 0.1 10 < th dose independent rect. 2 14
978 67.39 radiation 40.0 90 < th dose dependent rect. 1 14
979 67.39 precipitation 0.1 10 < th dose dependent rect. 2 14
984 67.40 temperature 30.0 10 < th dose independent rect. 16 10
987 67.40 wind 9.0 10 < th dose independent rect. 2 14
991 67.40 precipitation 0.1 720 < th dose independent rect. 15 16
995 67.40 atmosphere 995.0 720 > th dose independent rect. 15 23