Os06g0173000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0173000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 379.13 | 0.915 | 3.41 | 0.67 | 0.481 | -1.19 | -0.862 | -4.95 | -0.214 | 19.1 | 29.23 | 277 | -- | -- |
| 387.32 | 0.917 | 3.45 | 0.0776 | 0.512 | -1.73 | -0.642 | -- | -0.202 | 18.9 | 29.7 | 274 | -- | -- |
| 380.32 | 0.908 | 3.42 | 0.635 | 0.477 | -1.22 | -- | -4.32 | -0.241 | 19.9 | 29.1 | 276 | -- | -- |
| 388.04 | 0.917 | 3.45 | 0.0795 | 0.52 | -1.73 | -- | -- | -0.221 | 19.3 | 29.71 | 272 | -- | -- |
| 389.39 | 0.919 | 3.44 | 0.599 | -- | -1.46 | -- | -3.77 | -0.314 | -- | 28.9 | 350 | -- | -- |
| 459.01 | 1 | 3.48 | 0.345 | 1.12 | -- | 0.383 | -- | -0.269 | 18.1 | -- | -- | -- | -- |
| 459.37 | 1 | 3.48 | 0.341 | 1.13 | -- | -- | -- | -0.267 | 18.1 | -- | -- | -- | -- |
| 396.8 | 0.928 | 3.49 | 0.0437 | -- | -1.72 | -- | -- | -0.437 | -- | 28.76 | 366 | -- | -- |
| 388.18 | 0.918 | 3.46 | -- | 0.512 | -1.74 | -- | -- | -0.228 | 19.3 | 29.72 | 274 | -- | -- |
| 525.08 | 1.07 | 3.46 | 0.309 | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
| 462.44 | 1.01 | 3.48 | -- | 1.12 | -- | -- | -- | -0.305 | 18.1 | -- | -- | -- | -- |
| 396.67 | 0.928 | 3.49 | -- | -- | -1.75 | -- | -- | -0.432 | -- | 28.81 | 364 | -- | -- |
| 527.61 | 1.07 | 3.46 | -- | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 373.75 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 4 | 376.43 | temperature | 30 | 270 | > th | dose independent | sin | 3 | NA |
| 6 | 377.68 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 9 | 377.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 15 | 379.86 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 4 |
| 72 | 382.17 | temperature | 30 | 270 | < th | dose independent | rect. | 19 | 23 |
| 73 | 382.43 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 90 | 382.98 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 22 |
| 91 | 383.00 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 108 | 383.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 110 | 383.52 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 111 | 383.54 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 118 | 383.64 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 9 |
| 141 | 383.81 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 162 | 384.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 201 | 384.75 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 23 |
| 208 | 385.13 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 211 | 385.25 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 216 | 385.55 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 308 | 385.75 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 315 | 386.00 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 334 | 386.51 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 342 | 386.70 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 7 |
| 371 | 386.97 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 402 | 387.18 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 23 |
| 494 | 387.75 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 8 |
| 505 | 387.88 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 5 |
| 552 | 388.32 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 14 |
| 612 | 388.74 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 621 | 388.80 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 714 | 389.94 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 17 |
| 830 | 390.22 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 23 |
| 838 | 390.25 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 12 |
| 841 | 390.27 | temperature | 30 | 270 | > th | dose dependent | sin | 9 | NA |
| 880 | 390.66 | temperature | 10 | 90 | > th | dose dependent | sin | 22 | NA |
| 909 | 391.00 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 23 |
| 970 | 391.63 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 971 | 391.64 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 12 |