Os06g0172200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Parvalbumin family protein.
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Os06g0172200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Parvalbumin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.39 | 0.337 | 11.6 | 0.23 | 1.59 | 0.634 | 0.117 | -1.28 | 0.135 | 7.38 | 77.67 | 1208 | -- | -- |
| 53.08 | 0.339 | 11.6 | 0.348 | 1.59 | 0.539 | 0.191 | -- | 0.14 | 7.39 | 82.62 | 1210 | -- | -- |
| 51.42 | 0.334 | 11.6 | 0.233 | 1.59 | 0.635 | -- | -1.26 | 0.133 | 7.39 | 78.66 | 1207 | -- | -- |
| 53.18 | 0.34 | 11.6 | 0.352 | 1.59 | 0.534 | -- | -- | 0.138 | 7.39 | 82.87 | 1210 | -- | -- |
| 180.7 | 0.626 | 11.6 | 0.267 | -- | 0.681 | -- | -1.25 | 0.135 | -- | 86.58 | 1365 | -- | -- |
| 59.25 | 0.361 | 11.6 | 0.429 | 1.58 | -- | 0.182 | -- | 0.126 | 7.13 | -- | -- | -- | -- |
| 59.34 | 0.361 | 11.6 | 0.433 | 1.58 | -- | -- | -- | 0.125 | 7.13 | -- | -- | -- | -- |
| 182.13 | 0.629 | 11.6 | 0.406 | -- | 0.6 | -- | -- | 0.147 | -- | 90 | 1369 | -- | -- |
| 56.29 | 0.349 | 11.6 | -- | 1.59 | 0.565 | -- | -- | 0.104 | 7.4 | 79.98 | 1207 | -- | -- |
| 190.72 | 0.645 | 11.6 | 0.462 | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
| 64.27 | 0.375 | 11.6 | -- | 1.58 | -- | -- | -- | 0.0772 | 7.11 | -- | -- | -- | -- |
| 186.25 | 0.636 | 11.6 | -- | -- | 0.64 | -- | -- | 0.118 | -- | 85.89 | 1365 | -- | -- |
| 196.36 | 0.654 | 11.6 | -- | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.83 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 5 | 50.05 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 38 | 50.56 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 50 | 50.79 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 54 | 50.86 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 56 | 50.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 62 | 50.97 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 69 | 51.00 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 71 | 51.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 76 | 51.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 98 | 51.09 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 101 | 51.12 | radiation | 40 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 102 | 51.12 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 114 | 51.17 | wind | 3 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 130 | 51.23 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 131 | 51.23 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 132 | 51.24 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 12 |
| 138 | 51.24 | wind | 3 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 144 | 51.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 163 | 51.29 | humidity | 50 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 164 | 51.30 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 230 | 51.46 | humidity | 50 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 250 | 51.50 | humidity | 70 | 1440 | > th | dose independent | sin | 4 | NA |
| 262 | 51.52 | wind | 3 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 268 | 51.53 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 294 | 51.59 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 295 | 51.59 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 300 | 51.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 306 | 51.62 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 307 | 51.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 308 | 51.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 408 | 51.71 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 430 | 51.75 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 19 |
| 491 | 51.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 493 | 51.82 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 535 | 51.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 544 | 51.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 549 | 51.91 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 555 | 51.91 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 580 | 51.93 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 606 | 51.95 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 659 | 52.00 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 666 | 52.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 667 | 52.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 694 | 52.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 17 |
| 838 | 52.11 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 875 | 52.11 | humidity | 50 | 1440 | > th | dose dependent | sin | 0 | NA |
| 927 | 52.13 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 941 | 52.13 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 947 | 52.13 | wind | 3 | 4320 | < th | dose dependent | rect. | 17 | 12 |
| 970 | 52.15 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 977 | 52.16 | radiation | 10 | 1440 | > th | dose independent | sin | 0 | NA |
| 978 | 52.16 | radiation | 40 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 987 | 52.16 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 21 |