FiT-DB / Search/ Help/ Sample detail

Os06g0172000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.57 (0.0244) R2 : 0.788
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.53 (0.0652) R2dC : 0.735 R2C : 0.579
β3 : -1.42 (0.0737) R2dE : 0.18 R2E : 0.00509
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.373 (0.0513) R2dN8 : 0.0317 R2N8 : 0.0244
σ : 0.457
deviance : 96.41
__
_____
C
peak time of C : 18.3
E
wheather : temperature
threshold : 44.28
memory length : 19
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.07
open length of G : 17.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.45 0.457 8.57 -0.0779 2.43 -1.45 -0.555 -0.901 -0.394 18.7 36.86 17 5.05 18
95.58 0.455 8.58 -0.0889 2.49 -1.39 -0.655 -- -0.387 18.5 41.99 19 5.06 17.9
94.98 0.454 8.57 -0.0578 2.47 -1.44 -- -0.744 -0.379 18.5 39.13 19 5.05 17.9
96.19 0.457 8.57 -0.0934 2.52 -1.43 -- -- -0.385 18.4 43.36 18 5.08 17.9
331.82 0.853 8.53 -0.142 -- -2.04 -- -1.46 -0.478 -- 32.9 128 2.92 18.9
143.53 0.562 8.57 0.0431 2.36 -- -0.449 -- -0.359 19.5 -- -- -- --
144.08 0.562 8.57 0.0536 2.36 -- -- -- -0.36 19.5 -- -- -- --
241.37 0.724 8.71 -0.332 -- -2.8 -- -- -0.783 -- 34.91 313 0.0167 19.5
96.41 0.457 8.57 -- 2.53 -1.42 -- -- -0.373 18.3 44.28 19 5.07 17.9
442.62 0.983 8.52 0.0174 -- -- -- -- -0.397 -- -- -- -- --
144.16 0.562 8.58 -- 2.36 -- -- -- -0.366 19.5 -- -- -- --
115.19 0.5 8.62 -- -- -2.49 -- -- -0.418 -- 42.01 252 1.63 8.32
442.63 0.982 8.52 -- -- -- -- -- -0.399 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.33 temperature 30.0 30 < th dose independent rect. 5 18
2 100.45 temperature 30.0 30 < th dose dependent rect. 5 18
3 100.52 temperature 30.0 270 < th dose dependent rect. 2 7
6 101.79 atmosphere 995.0 10 > th dose dependent rect. 5 18
9 102.16 temperature 10.0 270 > th dose dependent rect. 22 15
11 102.58 temperature 10.0 30 > th dose dependent rect. 8 21
15 103.10 temperature 10.0 30 > th dose dependent rect. 23 6
16 103.11 humidity 80.0 30 > th dose independent rect. 23 6
21 103.56 temperature 25.0 270 < th dose independent rect. 3 6
26 104.03 humidity 50.0 30 > th dose dependent rect. 23 6
27 104.05 temperature 30.0 90 < th dose dependent rect. 4 7
29 104.35 wind 7.0 30 < th dose independent rect. 23 6
33 104.44 radiation 1.0 30 < th dose dependent rect. 23 6
34 104.46 temperature 10.0 30 > th dose independent rect. 23 6
35 104.46 temperature 30.0 30 < th dose independent rect. 23 6
36 104.46 humidity 50.0 30 > th dose independent rect. 23 6
39 104.46 atmosphere 995.0 30 > th dose independent rect. 23 6
40 104.46 radiation 1.0 30 < th dose independent rect. 23 6
45 104.46 temperature 10.0 30 > th dose independent rect. 5 18
47 104.46 atmosphere 1015.0 30 < th dose independent rect. 5 18
57 104.71 precipitation 0.1 30 < th dose independent rect. 23 6
58 104.71 precipitation 0.1 30 < th dose dependent rect. 23 6
59 104.72 wind 9.0 30 < th dose dependent rect. 23 6
67 105.05 temperature 30.0 270 < th dose dependent rect. 1 20
90 105.20 temperature 30.0 30 < th dose dependent rect. 5 5
93 105.41 precipitation 0.1 30 < th dose independent rect. 5 18
94 105.41 precipitation 0.1 30 < th dose dependent rect. 5 18
97 105.48 wind 9.0 30 < th dose independent rect. 5 18
102 105.64 atmosphere 995.0 30 > th dose independent rect. 5 18
103 105.71 temperature 10.0 270 > th dose dependent rect. 7 20
110 106.05 temperature 10.0 90 > th dose dependent rect. 9 19
155 107.38 radiation 1.0 30 < th dose dependent rect. 23 15
161 107.46 radiation 1.0 30 < th dose dependent rect. 23 9
212 108.37 atmosphere 1015.0 30 < th dose independent rect. 23 6
224 108.72 humidity 50.0 30 > th dose independent rect. 5 18
232 108.87 radiation 1.0 10 < th dose independent rect. 23 15
246 108.98 temperature 25.0 270 < th dose independent rect. 2 18
280 109.22 humidity 50.0 270 > th dose independent rect. 16 15
294 109.32 temperature 30.0 270 < th dose dependent rect. 5 1
296 109.34 wind 7.0 270 < th dose independent rect. 6 23
361 110.21 temperature 30.0 10 < th dose independent rect. 5 5
376 110.46 temperature 25.0 270 > th dose independent rect. 22 16
396 110.70 radiation 30.0 270 < th dose dependent rect. 16 15
399 110.79 temperature 30.0 30 < th dose dependent rect. 5 13
447 111.15 humidity 80.0 270 > th dose independent rect. 23 2
467 111.59 wind 5.0 270 < th dose independent rect. 23 2
470 111.68 wind 5.0 270 < th dose independent rect. 8 19
481 111.84 wind 9.0 270 < th dose dependent rect. 7 20
487 111.87 wind 7.0 30 < th dose independent rect. 8 21
489 111.92 temperature 30.0 270 < th dose independent rect. 16 15
493 111.95 radiation 40.0 10 < th dose dependent rect. 5 18
500 112.02 radiation 20.0 270 < th dose independent rect. 16 15
554 112.21 temperature 15.0 270 > th dose independent rect. 1 22
594 112.46 wind 9.0 270 < th dose dependent rect. 20 7
596 112.48 wind 9.0 270 < th dose dependent rect. 23 2
601 112.53 temperature 20.0 270 > th dose dependent sin 6 NA
602 112.54 radiation 40.0 1440 < th dose dependent rect. 24 5
608 112.58 temperature 10.0 270 > th dose dependent rect. 23 2
631 112.84 radiation 40.0 30 < th dose independent rect. 5 5
664 113.12 wind 9.0 270 < th dose independent rect. 7 10
677 113.17 wind 9.0 30 < th dose dependent rect. 10 19
679 113.18 temperature 30.0 90 < th dose dependent sin 3 NA
688 113.20 humidity 50.0 30 > th dose dependent rect. 5 18
697 113.29 wind 7.0 30 < th dose independent rect. 10 19
703 113.37 radiation 1.0 30 < th dose dependent sin 9 NA
704 113.38 humidity 70.0 30 > th dose independent rect. 5 5
706 113.38 humidity 50.0 270 > th dose independent rect. 3 17
709 113.39 temperature 30.0 270 < th dose dependent sin 6 NA
710 113.40 temperature 10.0 1440 > th dose independent rect. 24 5
713 113.40 temperature 30.0 1440 < th dose independent rect. 24 5
717 113.40 humidity 50.0 1440 > th dose independent rect. 24 5
726 113.40 atmosphere 995.0 1440 > th dose independent rect. 24 5
727 113.40 radiation 20.0 1440 < th dose independent rect. 24 5
741 113.40 temperature 10.0 1440 > th dose independent rect. 5 19
744 113.41 temperature 25.0 270 < th dose independent rect. 2 13
745 113.41 atmosphere 995.0 30 > th dose dependent rect. 23 6
746 113.42 precipitation 0.1 30 < th dose independent rect. 8 21
749 113.42 precipitation 0.1 30 < th dose dependent rect. 8 21
754 113.46 radiation 20.0 30 < th dose independent rect. 5 18
761 113.50 precipitation 0.1 270 < th dose independent rect. 6 22
762 113.50 precipitation 0.1 270 < th dose dependent rect. 6 22
765 113.51 temperature 30.0 270 < th dose dependent rect. 1 12
770 113.53 wind 7.0 30 < th dose independent rect. 5 3
773 113.54 precipitation 0.1 30 < th dose independent rect. 5 3
774 113.54 precipitation 0.1 30 < th dose dependent rect. 5 3
779 113.57 radiation 40.0 30 < th dose dependent rect. 5 5
783 113.59 temperature 10.0 30 > th dose independent rect. 5 3
786 113.59 humidity 50.0 30 > th dose independent rect. 5 3
788 113.59 atmosphere 995.0 30 > th dose independent rect. 5 3
789 113.59 atmosphere 1015.0 30 < th dose independent rect. 5 3
790 113.59 temperature 10.0 30 > th dose independent rect. 8 21
793 113.61 humidity 50.0 270 > th dose dependent rect. 23 2
794 113.61 humidity 50.0 30 > th dose dependent rect. 5 5
804 113.65 precipitation 0.1 270 < th dose independent rect. 5 1
805 113.65 precipitation 0.1 270 < th dose dependent rect. 5 1
813 113.69 temperature 25.0 270 < th dose independent sin 6 NA
817 113.73 wind 7.0 270 < th dose independent rect. 5 1
819 113.73 temperature 10.0 270 > th dose independent rect. 5 1
821 113.73 temperature 30.0 270 < th dose independent rect. 5 1
822 113.73 humidity 50.0 270 > th dose independent rect. 5 1
825 113.73 atmosphere 995.0 270 > th dose independent rect. 5 1
826 113.73 atmosphere 1015.0 270 < th dose independent rect. 5 1
827 113.73 radiation 20.0 270 < th dose independent rect. 5 1
830 113.73 temperature 10.0 270 > th dose independent rect. 6 23
843 113.80 humidity 50.0 270 > th dose independent rect. 2 19
858 113.87 temperature 30.0 90 < th dose dependent rect. 4 11
892 114.02 temperature 25.0 270 > th dose independent sin 6 NA
896 114.03 wind 9.0 30 < th dose dependent rect. 8 21
920 114.09 radiation 40.0 30 < th dose independent rect. 5 3
924 114.10 radiation 30.0 270 < th dose dependent rect. 3 6
927 114.11 radiation 40.0 30 < th dose independent rect. 5 18
935 114.16 wind 9.0 30 < th dose dependent rect. 5 5
939 114.18 temperature 10.0 270 > th dose dependent rect. 7 9
953 114.22 precipitation 0.1 270 < th dose independent rect. 23 2
954 114.22 precipitation 0.1 270 < th dose dependent rect. 23 2
966 114.29 temperature 10.0 270 > th dose independent rect. 23 2
967 114.29 temperature 30.0 270 < th dose independent rect. 23 2
968 114.29 humidity 50.0 270 > th dose independent rect. 23 2
971 114.29 atmosphere 995.0 270 > th dose independent rect. 23 2
972 114.29 radiation 1.0 270 < th dose independent rect. 23 2
988 114.29 radiation 1.0 270 < th dose dependent rect. 23 2