FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0170100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : X8 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0381) R2 : 0.00259
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0873 (0.0803) R2dN8 : 0.00334 R2N8 : 0.00259
σ : 0.718
deviance : 236.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
213.47 0.68 3.06 -0.197 0.276 1.97 0.113 0.888 0.0921 8.62 11.48 709 -- --
213.5 0.681 3.05 -0.197 0.287 1.81 0.15 -- 0.0969 8.44 11.5 706 -- --
213.51 0.681 3.06 -0.193 0.276 1.98 -- 0.911 0.0923 8.69 11.44 711 -- --
213.51 0.681 3.06 -0.205 0.275 1.78 -- -- 0.0923 8.68 11.28 716 -- --
217.75 0.687 3.07 -0.193 -- 1.97 -- 1.26 0.0926 -- 11.28 729 -- --
231.47 0.713 3.07 -0.314 0.216 -- 0.337 -- 0.0519 8.66 -- -- -- --
231.79 0.713 3.07 -0.302 0.214 -- -- -- 0.0527 9.19 -- -- -- --
217.75 0.687 3.06 -0.209 -- 1.69 -- -- 0.0926 -- 11.34 708 -- --
214.6 0.682 3.05 -- 0.277 1.83 -- -- 0.116 8.73 11.24 746 -- --
234.46 0.715 3.07 -0.302 -- -- -- -- 0.0538 -- -- -- -- --
234.19 0.716 3.06 -- 0.214 -- -- -- 0.0863 9.3 -- -- -- --
218.89 0.689 3.06 -- -- 1.75 -- -- 0.117 -- 11.22 751 -- --
236.87 0.718 3.07 -- -- -- -- -- 0.0873 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 210.59 temperature 20.0 30 < th dose independent rect. 7 1
4 210.59 temperature 20.0 30 < th dose dependent rect. 7 1
14 213.61 wind 9.0 720 > th dose dependent rect. 12 1
17 213.88 wind 9.0 720 > th dose independent rect. 12 1
19 213.93 wind 9.0 1440 > th dose independent rect. 21 5
27 213.97 wind 9.0 1440 > th dose independent rect. 21 2
34 214.28 wind 9.0 1440 > th dose dependent rect. 21 5
42 214.31 wind 9.0 1440 > th dose dependent rect. 21 2
56 214.73 wind 9.0 720 > th dose independent rect. 19 7
72 214.78 wind 9.0 720 > th dose independent rect. 19 4
90 214.90 temperature 20.0 10 < th dose independent rect. 6 6
128 215.11 temperature 20.0 10 < th dose independent rect. 6 12
141 215.18 wind 9.0 720 > th dose dependent rect. 19 7
151 215.21 wind 9.0 720 > th dose dependent rect. 19 4
192 215.48 temperature 20.0 90 < th dose independent rect. 7 11
204 215.67 temperature 20.0 90 < th dose dependent rect. 6 13
206 215.71 temperature 20.0 30 < th dose dependent rect. 7 7
323 216.29 wind 5.0 10 > th dose independent rect. 8 1
325 216.29 wind 5.0 10 > th dose dependent rect. 8 1
390 217.14 wind 9.0 720 < th dose independent rect. 8 9
431 217.21 wind 9.0 720 < th dose independent rect. 5 22
436 217.25 wind 9.0 720 < th dose independent rect. 5 15
441 217.48 wind 9.0 720 < th dose independent rect. 23 18
442 217.49 wind 9.0 90 > th dose dependent rect. 13 3
443 217.54 wind 9.0 90 > th dose independent rect. 13 3
463 217.78 wind 9.0 720 > th dose dependent rect. 18 22
466 217.85 wind 9.0 720 > th dose dependent rect. 20 20
481 217.95 atmosphere 1005.0 10 > th dose independent rect. 4 1
483 217.97 wind 9.0 30 < th dose independent rect. 5 23
492 218.17 atmosphere 1000.0 10 > th dose dependent rect. 4 1
494 218.19 radiation 10.0 720 < th dose independent rect. 10 1
495 218.20 wind 9.0 720 > th dose independent rect. 18 22
497 218.23 wind 9.0 720 > th dose independent rect. 20 20
505 218.32 temperature 15.0 10 > th dose dependent rect. 4 1
522 218.44 wind 5.0 10 < th dose independent rect. 4 1
536 218.56 humidity 80.0 10 > th dose independent rect. 4 1
538 218.57 temperature 10.0 10 > th dose independent rect. 4 1
540 218.57 temperature 30.0 10 < th dose independent rect. 4 1
541 218.57 humidity 50.0 10 > th dose independent rect. 4 1
545 218.57 atmosphere 1010.0 10 < th dose independent rect. 4 1
547 218.57 radiation 1.0 10 < th dose independent rect. 4 1
552 218.57 precipitation 0.1 10 < th dose independent rect. 4 1
553 218.57 temperature 10.0 10 > th dose independent rect. 5 23
554 218.57 radiation 20.0 10 < th dose dependent rect. 4 1
557 218.57 precipitation 0.1 10 < th dose dependent rect. 4 1
559 218.60 wind 9.0 10 < th dose dependent rect. 4 1
569 218.67 humidity 50.0 10 > th dose dependent rect. 4 1
570 218.68 wind 9.0 720 > th dose dependent rect. 15 1
571 218.71 wind 9.0 10 > th dose independent rect. 15 1
579 218.71 wind 9.0 10 > th dose dependent rect. 15 1
595 218.75 radiation 10.0 720 < th dose dependent rect. 10 2
596 218.76 wind 9.0 720 < th dose independent rect. 12 15
619 218.94 radiation 20.0 720 < th dose independent rect. 10 3
624 218.97 precipitation 0.1 10 < th dose independent rect. 5 23
625 218.97 precipitation 0.1 10 < th dose dependent rect. 5 23
628 219.02 atmosphere 995.0 10 > th dose independent rect. 5 23
644 219.16 atmosphere 1015.0 10 < th dose dependent rect. 4 1
646 219.17 wind 1.0 30 > th dose independent rect. 4 1
662 219.24 radiation 20.0 720 < th dose independent rect. 17 20
699 219.43 wind 9.0 720 < th dose independent rect. 12 23
707 219.50 wind 9.0 720 < th dose independent rect. 5 13
711 219.53 temperature 30.0 10 < th dose dependent rect. 4 1
712 219.54 wind 7.0 720 < th dose independent rect. 12 5
762 219.63 wind 9.0 720 > th dose independent rect. 15 1
791 219.78 wind 7.0 720 < th dose independent rect. 15 2
793 219.80 wind 9.0 720 > th dose dependent sin 4 NA
832 219.92 wind 9.0 720 < th dose independent rect. 1 16
844 219.96 wind 9.0 720 > th dose independent sin 3 NA
848 219.97 temperature 30.0 30 < th dose independent rect. 5 23
855 220.00 radiation 10.0 90 < th dose independent rect. 10 5
876 220.13 radiation 10.0 90 < th dose independent rect. 10 3
878 220.15 radiation 20.0 90 < th dose independent rect. 10 19
891 220.23 radiation 40.0 720 < th dose dependent rect. 17 20
893 220.26 wind 9.0 720 < th dose independent sin 2 NA
917 220.38 radiation 10.0 720 < th dose independent rect. 24 22
921 220.40 wind 9.0 10 < th dose dependent rect. 5 23
923 220.42 radiation 10.0 720 < th dose independent rect. 2 17
928 220.44 temperature 10.0 10 > th dose dependent rect. 5 23
940 220.53 radiation 10.0 720 < th dose independent rect. 24 15
944 220.56 radiation 40.0 720 < th dose dependent rect. 10 3
954 220.60 temperature 20.0 10 > th dose independent rect. 5 23
961 220.63 wind 9.0 720 < th dose independent rect. 19 23
975 220.71 radiation 10.0 720 < th dose independent rect. 7 8
983 220.74 radiation 1.0 4320 < th dose independent rect. 18 14