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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0169900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GOS9 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0233) R2 : 0.022
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.157 (0.049) R2dN8 : 0.0284 R2N8 : 0.022
σ : 0.438
deviance : 88.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.78 0.433 3.04 -0.0248 0.128 -0.541 0.101 3.76 0.16 8.18 48.15 840 -- --
87.31 0.439 3.06 0.0207 0.109 -0.204 -0.0726 -- 0.156 8.28 48.15 840 -- --
84.81 0.429 3.04 -0.0219 0.127 -0.536 -- 3.7 0.161 8.27 48.14 840 -- --
85.81 0.431 3.05 -0.0156 0.117 0.918 -- -- 0.159 8.36 36.88 2591 -- --
85.7 0.431 3.04 -0.0135 -- -0.601 -- 3.82 0.165 -- 47.64 833 -- --
87.43 0.438 3.06 0.0124 0.107 -- -0.0891 -- 0.157 8.21 -- -- -- --
87.46 0.438 3.06 0.00945 0.108 -- -- -- 0.157 7.96 -- -- -- --
85.83 0.431 3.06 -0.0588 -- 0.918 -- -- 0.164 -- 46.78 2057 -- --
85.13 0.43 3.05 -- 0.119 0.928 -- -- 0.169 8.46 46.57 2398 -- --
88.09 0.439 3.06 0.0106 -- -- -- -- 0.158 -- -- -- -- --
87.46 0.437 3.06 -- 0.108 -- -- -- 0.155 7.95 -- -- -- --
85.91 0.432 3.06 -- -- 0.894 -- -- 0.17 -- 46.58 2416 -- --
88.09 0.438 3.06 -- -- -- -- -- 0.157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.72 wind 7.0 90 > th dose independent rect. 1 8
2 81.73 wind 7.0 90 > th dose dependent rect. 1 8
3 81.74 wind 7.0 90 > th dose independent rect. 7 2
10 81.75 wind 7.0 90 > th dose dependent rect. 7 2
17 82.02 radiation 10.0 10 > th dose independent rect. 6 1
43 82.02 radiation 10.0 10 > th dose dependent rect. 6 1
76 82.61 temperature 25.0 10 > th dose independent rect. 6 2
78 83.12 temperature 20.0 30 > th dose independent rect. 2 1
79 83.12 temperature 20.0 30 > th dose dependent rect. 2 1
81 83.20 wind 3.0 30 < th dose dependent rect. 6 1
86 83.36 atmosphere 1005.0 30 > th dose dependent rect. 6 1
87 83.39 atmosphere 1005.0 30 > th dose independent rect. 2 1
89 83.43 atmosphere 1000.0 30 > th dose dependent rect. 2 1
90 83.44 wind 3.0 30 < th dose independent rect. 2 1
99 83.50 temperature 10.0 30 > th dose independent rect. 2 1
101 83.50 temperature 30.0 30 < th dose independent rect. 2 1
102 83.50 humidity 50.0 30 > th dose independent rect. 2 1
106 83.50 atmosphere 1010.0 30 < th dose independent rect. 2 1
108 83.50 radiation 1.0 30 < th dose independent rect. 2 1
113 83.50 precipitation 0.1 30 < th dose independent rect. 2 1
115 83.50 temperature 10.0 30 > th dose independent rect. 3 23
116 83.50 radiation 1.0 30 < th dose dependent rect. 2 1
121 83.50 precipitation 0.1 30 < th dose dependent rect. 2 1
126 83.54 wind 9.0 30 < th dose dependent rect. 2 1
127 83.56 wind 1.0 30 > th dose independent rect. 2 1
129 83.58 humidity 50.0 30 > th dose dependent rect. 2 1
140 83.68 atmosphere 1015.0 30 < th dose dependent rect. 2 1
144 83.75 wind 1.0 10 < th dose independent rect. 6 2
161 83.78 humidity 80.0 30 > th dose dependent rect. 6 1
171 83.89 temperature 20.0 90 > th dose dependent rect. 6 1
176 83.93 temperature 25.0 30 > th dose dependent rect. 5 3
182 83.96 temperature 30.0 30 < th dose dependent rect. 2 1
187 84.00 temperature 25.0 30 > th dose dependent rect. 24 8
194 84.05 temperature 30.0 30 < th dose dependent rect. 6 1
212 84.16 wind 9.0 1440 < th dose independent rect. 7 1
213 84.16 temperature 10.0 1440 > th dose independent rect. 7 1
217 84.16 temperature 30.0 1440 < th dose independent rect. 7 1
221 84.16 humidity 50.0 1440 > th dose independent rect. 7 1
226 84.16 atmosphere 995.0 1440 > th dose independent rect. 7 1
227 84.16 atmosphere 1015.0 1440 < th dose independent rect. 7 1
228 84.16 temperature 10.0 1440 > th dose independent rect. 8 23
234 84.17 radiation 20.0 270 > th dose dependent rect. 6 1
251 84.19 humidity 80.0 30 > th dose independent rect. 6 1
265 84.21 atmosphere 1015.0 30 < th dose independent rect. 7 23
272 84.23 radiation 10.0 30 < th dose independent sin 11 NA
276 84.28 humidity 90.0 30 < th dose independent rect. 6 1
282 84.29 temperature 10.0 30 > th dose independent rect. 6 1
284 84.29 temperature 30.0 30 < th dose independent rect. 6 1
285 84.29 humidity 50.0 30 > th dose independent rect. 6 1
288 84.29 atmosphere 995.0 30 > th dose independent rect. 6 1
289 84.29 atmosphere 1015.0 30 < th dose independent rect. 6 1
290 84.29 radiation 20.0 270 > th dose independent rect. 6 1
291 84.29 radiation 20.0 30 < th dose independent rect. 6 1
294 84.29 precipitation 0.1 30 < th dose independent rect. 6 1
308 84.29 temperature 10.0 30 > th dose independent rect. 7 23
310 84.29 precipitation 0.1 30 < th dose dependent rect. 6 1
314 84.31 wind 1.0 30 > th dose independent rect. 6 1
319 84.35 atmosphere 1015.0 30 < th dose independent rect. 21 23
328 84.39 temperature 10.0 30 > th dose dependent rect. 6 1
341 84.45 temperature 25.0 10 > th dose dependent rect. 22 13
342 84.45 radiation 10.0 30 > th dose dependent rect. 16 16
343 84.46 atmosphere 1015.0 720 < th dose independent rect. 7 15
372 84.49 temperature 25.0 30 > th dose dependent rect. 22 11
378 84.50 wind 9.0 30 < th dose independent rect. 7 23
382 84.51 radiation 40.0 30 < th dose dependent rect. 6 1
387 84.53 humidity 50.0 720 < th dose dependent rect. 14 1
393 84.55 radiation 20.0 270 > th dose dependent rect. 16 1
413 84.58 wind 1.0 14400 > th dose independent rect. 4 3
418 84.60 atmosphere 1015.0 90 < th dose independent rect. 17 12
421 84.61 radiation 30.0 10 > th dose independent rect. 7 1
455 84.61 temperature 25.0 10 > th dose dependent rect. 24 11
457 84.62 radiation 10.0 30 > th dose independent sin 11 NA
459 84.63 temperature 25.0 10 < th dose dependent rect. 8 2
462 84.64 wind 1.0 14400 < th dose independent rect. 4 3
485 84.71 wind 1.0 14400 < th dose dependent rect. 4 3
487 84.72 atmosphere 995.0 10 > th dose dependent rect. 14 12
520 84.76 radiation 40.0 90 > th dose dependent rect. 8 1
554 84.78 atmosphere 1015.0 270 < th dose independent rect. 15 13
575 84.81 humidity 70.0 10 < th dose independent rect. 7 1
578 84.81 humidity 50.0 720 < th dose independent rect. 14 1
637 84.81 humidity 70.0 10 < th dose dependent rect. 7 1
700 84.82 atmosphere 1000.0 10 < th dose independent rect. 7 1
710 84.82 atmosphere 1015.0 720 < th dose independent rect. 7 22
711 84.82 wind 9.0 30 < th dose independent rect. 3 23
713 84.82 atmosphere 1000.0 10 < th dose dependent rect. 7 1
760 84.85 atmosphere 1015.0 30 < th dose independent rect. 15 23
774 84.87 humidity 50.0 1440 < th dose independent rect. 11 1
780 84.87 atmosphere 995.0 30 > th dose dependent rect. 12 14
785 84.89 temperature 10.0 1440 > th dose independent rect. 21 1
788 84.89 temperature 30.0 1440 < th dose independent rect. 21 1
792 84.89 humidity 50.0 1440 > th dose independent rect. 21 1
798 84.89 atmosphere 995.0 1440 > th dose independent rect. 21 1
799 84.89 radiation 1.0 1440 < th dose independent rect. 21 1
819 84.89 atmosphere 1015.0 720 < th dose independent rect. 17 18
820 84.89 temperature 10.0 1440 > th dose independent rect. 22 23
860 84.90 radiation 40.0 1440 < th dose dependent rect. 21 1
877 84.91 temperature 30.0 14400 < th dose independent rect. 14 1
885 84.91 humidity 50.0 1440 < th dose dependent rect. 16 22
898 84.92 radiation 10.0 30 < th dose independent rect. 21 13
917 84.93 temperature 25.0 14400 > th dose dependent rect. 13 1
918 84.93 atmosphere 1015.0 30 < th dose dependent rect. 6 1
920 84.94 temperature 25.0 14400 > th dose independent rect. 12 1
940 84.95 temperature 25.0 30 > th dose independent rect. 20 1
946 84.95 temperature 25.0 10 < th dose independent rect. 2 6
972 84.96 humidity 50.0 1440 < th dose dependent rect. 12 3
979 84.97 humidity 50.0 1440 < th dose dependent rect. 12 1
980 84.97 atmosphere 1005.0 30 > th dose dependent rect. 20 1
982 84.97 humidity 80.0 10 < th dose dependent rect. 18 4
984 84.98 temperature 30.0 14400 > th dose independent rect. 14 1
1000 84.99 precipitation 0.1 720 < th dose independent rect. 13 2