Os06g0168800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase.
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Os06g0168800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.44 | 0.259 | 12.6 | 0.0125 | 1.01 | 0.702 | 0.145 | 1.83 | -0.353 | 22.2 | 0.1427 | 5368 | -- | -- |
| 31.12 | 0.26 | 12.6 | -0.0666 | 0.966 | 0.706 | 0.123 | -- | -0.307 | 22.2 | 0.6832 | 27679 | -- | -- |
| 30.52 | 0.257 | 12.6 | 0.011 | 1.01 | 0.704 | -- | 1.82 | -0.352 | 22.2 | 0.1422 | 5366 | -- | -- |
| 30.68 | 0.258 | 12.6 | -0.166 | 0.988 | 0.685 | -- | -- | -0.308 | 22.2 | 0.7968 | 27755 | -- | -- |
| 91.1 | 0.445 | 12.6 | 0.018 | -- | 0.691 | -- | 2.08 | -0.36 | -- | 0.1438 | 4839 | -- | -- |
| 42.43 | 0.305 | 12.6 | 0.249 | 1 | -- | 0.156 | -- | -0.42 | 22.2 | -- | -- | -- | -- |
| 42.53 | 0.305 | 12.6 | 0.243 | 1 | -- | -- | -- | -0.42 | 22.2 | -- | -- | -- | -- |
| 91.59 | 0.446 | 12.6 | -0.248 | -- | 0.715 | -- | -- | -0.344 | -- | 1.179 | 30839 | -- | -- |
| 31.5 | 0.261 | 12.6 | -- | 0.989 | 0.669 | -- | -- | -0.312 | 22.2 | 0.7962 | 27758 | -- | -- |
| 103.25 | 0.475 | 12.6 | 0.257 | -- | -- | -- | -- | -0.418 | -- | -- | -- | -- | -- |
| 44.08 | 0.311 | 12.6 | -- | 1 | -- | -- | -- | -0.447 | 22.3 | -- | -- | -- | -- |
| 92.56 | 0.448 | 12.6 | -- | -- | 0.658 | -- | -- | -0.339 | -- | 1 | 27802 | -- | -- |
| 104.99 | 0.478 | 12.6 | -- | -- | -- | -- | -- | -0.446 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 2 | 27.71 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 5 | 27.90 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 11 | 28.14 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 13 | 28.15 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 36 | 28.40 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 43 | 28.46 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 47 | 28.48 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 75 | 28.57 | humidity | 50 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 83 | 28.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 102 | 28.60 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 124 | 28.61 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 134 | 28.62 | temperature | 25 | 14400 | > th | dose dependent | sin | 3 | NA |
| 161 | 28.63 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 166 | 28.63 | humidity | 90 | 14400 | < th | dose dependent | rect. | 15 | 7 |
| 169 | 28.63 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 15 |
| 203 | 28.66 | humidity | 50 | 14400 | > th | dose dependent | rect. | 15 | 7 |
| 245 | 28.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 19 |
| 251 | 28.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 319 | 28.72 | humidity | 90 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 415 | 28.75 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 22 |
| 430 | 28.76 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 493 | 28.79 | temperature | 30 | 14400 | > th | dose independent | sin | 2 | NA |
| 496 | 28.79 | temperature | 30 | 14400 | < th | dose independent | sin | 1 | NA |
| 537 | 28.80 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 559 | 28.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 579 | 28.82 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 629 | 28.82 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 681 | 28.82 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 687 | 28.82 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 786 | 28.84 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 918 | 28.85 | humidity | 70 | 14400 | > th | dose independent | sin | 13 | NA |