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Os06g0168600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ribonucleotide reductase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.6 (0.0255) R2 : 0.835
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.29 (0.0905) R2dC : 1.53 R2C : 0.339
β3 : 2.34 (0.0865) R2dE : 0.495 R2E : -0.689
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.026 (0.0535) R2dN8 : 0.000108 R2N8 : -0.00832
σ : 0.477
deviance : 104.94
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_____
C
peak time of C : 18.7
E
wheather : radiation
threshold : 1.26
memory length : 306
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.96
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.21 0.439 9.58 0.731 4.12 2.13 1.86 0.926 0.0987 18.9 1.199 291 1.34 --
88.69 0.439 9.59 0.695 4.17 2.18 1.34 -- 0.0916 18.9 1.224 297 1.41 --
93.17 0.45 9.58 0.662 4.28 2.36 -- -0.0248 0.106 18.7 1.211 295 1.68 --
92.98 0.449 9.59 0.674 4.3 2.35 -- -- 0.0999 18.7 1.199 306 1.85 --
580.72 1.13 9.48 0.63 -- 0.797 -- 0.607 0.0802 -- 1.211 295 1.68 --
122.29 0.518 9.56 0.687 2.96 -- 1.48 -- 0.104 20.7 -- -- -- --
129.44 0.533 9.56 0.639 2.96 -- -- -- 0.104 20.6 -- -- -- --
124.15 0.519 9.55 0.45 -- -3.31 -- -- -0.0412 -- 59.82 646 2.03 --
104.94 0.477 9.6 -- 4.29 2.34 -- -- 0.026 18.7 1.26 306 1.96 --
623.65 1.17 9.48 0.631 -- -- -- -- 0.0785 -- -- -- -- --
140.22 0.554 9.58 -- 2.96 -- -- -- 0.033 20.7 -- -- -- --
130.07 0.531 9.5 -- -- -3.25 -- -- -0.00158 -- 54.33 612 1.49 --
634.17 1.18 9.5 -- -- -- -- -- 0.00844 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.97 temperature 30.0 270 < th dose dependent rect. 23 7
3 81.42 temperature 20.0 270 > th dose independent rect. 5 6
4 81.87 wind 7.0 270 < th dose independent rect. 10 20
5 82.22 temperature 20.0 270 > th dose independent rect. 6 4
10 83.29 temperature 20.0 90 > th dose independent rect. 19 17
16 84.01 temperature 10.0 10 > th dose dependent rect. 20 16
20 84.24 precipitation 0.1 270 < th dose independent rect. 10 20
21 84.24 precipitation 0.1 270 < th dose dependent rect. 10 20
28 84.47 temperature 20.0 10 > th dose independent rect. 8 4
33 84.97 radiation 1.0 270 > th dose independent rect. 6 4
38 85.16 radiation 1.0 270 > th dose independent rect. 5 6
54 85.36 temperature 10.0 270 > th dose dependent rect. 19 15
58 85.40 radiation 40.0 270 < th dose independent rect. 7 3
60 85.40 temperature 30.0 270 < th dose independent rect. 6 5
64 85.55 wind 7.0 270 < th dose independent rect. 7 2
69 85.75 wind 7.0 270 < th dose independent rect. 6 4
72 85.85 temperature 30.0 270 < th dose independent rect. 7 2
74 85.87 precipitation 0.1 270 < th dose independent rect. 6 4
75 85.87 precipitation 0.1 270 < th dose dependent rect. 6 4
76 85.89 humidity 90.0 90 < th dose independent rect. 7 5
78 85.90 atmosphere 995.0 270 > th dose independent rect. 6 4
79 85.90 atmosphere 1015.0 270 < th dose independent rect. 6 4
80 85.90 temperature 10.0 270 > th dose independent rect. 10 20
84 85.91 humidity 50.0 270 > th dose independent rect. 7 2
85 85.91 atmosphere 995.0 270 > th dose independent rect. 7 2
86 85.91 atmosphere 1015.0 270 < th dose independent rect. 7 2
87 85.91 temperature 10.0 270 > th dose independent rect. 9 22
89 85.93 precipitation 0.1 270 < th dose independent rect. 7 2
90 85.93 precipitation 0.1 270 < th dose dependent rect. 7 2
91 85.97 wind 9.0 10 < th dose independent rect. 12 20
92 85.98 humidity 50.0 270 > th dose independent rect. 6 4
96 86.14 temperature 20.0 270 > th dose independent rect. 17 18
106 86.24 temperature 10.0 270 > th dose dependent rect. 10 7
123 86.58 temperature 10.0 90 > th dose independent rect. 12 19
125 86.59 temperature 10.0 10 > th dose dependent rect. 12 8
126 86.62 temperature 30.0 270 < th dose dependent rect. 1 4
129 86.77 precipitation 0.1 10 < th dose independent rect. 12 20
130 86.77 precipitation 0.1 10 < th dose dependent rect. 12 20
157 87.06 wind 7.0 270 < th dose independent rect. 10 8
163 87.20 wind 9.0 10 < th dose independent rect. 8 4
164 87.24 radiation 40.0 270 < th dose independent rect. 6 19
172 87.30 radiation 40.0 270 < th dose independent rect. 6 17
177 87.39 temperature 10.0 10 > th dose independent rect. 8 4
179 87.39 atmosphere 995.0 10 > th dose independent rect. 8 4
180 87.39 atmosphere 1015.0 10 < th dose independent rect. 8 4
181 87.39 precipitation 0.1 10 < th dose independent rect. 8 4
182 87.39 temperature 10.0 10 > th dose independent rect. 12 20
183 87.39 precipitation 0.1 10 < th dose dependent rect. 8 4
185 87.46 wind 1.0 10 > th dose independent rect. 8 4
191 87.57 radiation 1.0 10 > th dose independent rect. 8 4
197 87.76 radiation 1.0 270 > th dose independent sin 7 NA
199 87.78 radiation 1.0 270 < th dose independent sin 7 NA
201 87.83 radiation 40.0 270 < th dose independent rect. 5 21
208 87.95 wind 9.0 270 < th dose dependent rect. 7 2
211 88.05 temperature 15.0 270 > th dose independent rect. 6 16
218 88.14 wind 1.0 270 > th dose independent rect. 11 19
227 88.30 radiation 40.0 270 < th dose dependent rect. 6 19
237 88.35 radiation 1.0 270 < th dose dependent sin 7 NA
262 88.71 radiation 40.0 270 < th dose dependent rect. 7 2
270 88.85 humidity 50.0 270 > th dose dependent rect. 7 2
273 88.92 temperature 10.0 1440 > th dose independent rect. 9 4
276 88.92 atmosphere 995.0 1440 > th dose independent rect. 9 4
277 88.92 temperature 10.0 1440 > th dose independent rect. 13 20
286 88.98 wind 7.0 90 < th dose independent rect. 12 7
291 89.03 radiation 20.0 270 < th dose independent rect. 15 10
300 89.11 wind 9.0 270 < th dose dependent rect. 6 4
307 89.23 temperature 10.0 10 > th dose dependent rect. 7 5
310 89.30 radiation 40.0 270 < th dose dependent rect. 15 10
333 89.45 temperature 10.0 270 > th dose dependent rect. 7 2
334 89.45 temperature 10.0 270 > th dose dependent rect. 6 4
335 89.46 temperature 25.0 90 < th dose independent rect. 23 9
338 89.49 temperature 30.0 270 < th dose independent rect. 17 17
374 89.66 temperature 25.0 270 < th dose independent rect. 23 7
386 89.72 temperature 30.0 90 < th dose dependent rect. 3 5
394 89.80 wind 1.0 270 > th dose independent rect. 7 3
396 89.83 atmosphere 1015.0 270 < th dose independent rect. 6 16
425 90.14 radiation 40.0 270 < th dose dependent rect. 6 17
435 90.18 temperature 30.0 10 < th dose dependent rect. 2 6
436 90.21 precipitation 0.1 270 < th dose independent rect. 22 8
437 90.21 precipitation 0.1 270 < th dose dependent rect. 22 8
454 90.37 radiation 40.0 270 < th dose dependent rect. 6 4
470 90.50 atmosphere 995.0 90 > th dose independent rect. 12 19
473 90.51 radiation 1.0 270 > th dose independent rect. 10 19
480 90.55 wind 7.0 270 < th dose independent rect. 22 8
482 90.57 radiation 1.0 270 > th dose independent rect. 10 9
528 90.80 atmosphere 995.0 270 > th dose independent rect. 18 16
530 90.81 humidity 50.0 10 > th dose independent rect. 8 4
533 90.83 temperature 10.0 270 > th dose independent rect. 22 8
535 90.83 humidity 50.0 270 > th dose independent rect. 22 8
538 90.83 atmosphere 995.0 270 > th dose independent rect. 22 8
539 90.83 radiation 20.0 270 < th dose independent rect. 22 8
542 90.83 precipitation 0.1 270 < th dose independent rect. 10 8
544 90.83 precipitation 0.1 270 < th dose dependent rect. 10 8
552 90.90 radiation 1.0 90 > th dose independent rect. 12 18
562 91.00 wind 7.0 270 < th dose independent rect. 1 15
565 91.03 atmosphere 995.0 10 > th dose independent rect. 12 20
567 91.05 radiation 40.0 270 < th dose dependent rect. 22 8
570 91.09 temperature 15.0 270 > th dose independent rect. 16 9
574 91.13 temperature 10.0 270 > th dose independent rect. 10 8
575 91.13 atmosphere 1015.0 270 < th dose independent rect. 10 8
591 91.21 humidity 50.0 270 > th dose independent rect. 18 16
595 91.23 wind 9.0 270 < th dose independent rect. 18 16
616 91.36 wind 9.0 10 < th dose independent rect. 12 8
627 91.41 temperature 30.0 270 < th dose dependent rect. 3 1
645 91.55 temperature 25.0 90 > th dose independent rect. 12 7
653 91.58 precipitation 0.1 90 < th dose independent rect. 12 7
654 91.58 precipitation 0.1 90 < th dose dependent rect. 12 7
679 91.71 temperature 20.0 270 > th dose independent rect. 5 20
712 91.84 atmosphere 1010.0 90 < th dose independent rect. 12 7
722 91.87 temperature 10.0 90 > th dose independent rect. 12 7
756 92.03 radiation 40.0 270 < th dose independent rect. 18 16
766 92.07 precipitation 0.1 270 < th dose independent rect. 1 15
767 92.07 precipitation 0.1 270 < th dose dependent rect. 1 15
775 92.14 atmosphere 1015.0 90 < th dose independent rect. 19 17
808 92.35 precipitation 0.1 10 < th dose independent rect. 12 8
810 92.35 precipitation 0.1 10 < th dose dependent rect. 12 8
822 92.40 wind 1.0 270 > th dose independent rect. 10 8
825 92.44 temperature 25.0 90 < th dose independent rect. 1 7
845 92.51 temperature 10.0 270 > th dose independent rect. 1 15
846 92.51 atmosphere 1015.0 270 < th dose independent rect. 1 15
850 92.52 temperature 25.0 10 > th dose independent rect. 12 8
880 92.62 wind 1.0 90 > th dose independent rect. 12 7
882 92.63 atmosphere 995.0 270 > th dose independent rect. 6 16
904 92.70 wind 9.0 10 < th dose independent rect. 20 16
916 92.73 precipitation 0.1 1440 < th dose independent rect. 10 3
921 92.73 precipitation 0.1 1440 < th dose dependent rect. 10 3
922 92.75 atmosphere 1010.0 10 < th dose independent rect. 12 8
923 92.75 humidity 70.0 270 > th dose independent rect. 6 19
933 92.82 atmosphere 1015.0 10 < th dose independent rect. 20 16
936 92.83 wind 1.0 270 > th dose independent rect. 23 7
937 92.85 humidity 70.0 270 > th dose independent rect. 6 17
947 92.92 temperature 10.0 10 > th dose independent rect. 12 8
951 92.92 atmosphere 995.0 10 > th dose independent rect. 20 16
996 93.09 atmosphere 995.0 270 > th dose independent rect. 16 9