Os06g0166900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0166900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.02 | 0.426 | 8.3 | -0.753 | 0.716 | 1.96 | -0.553 | -0.431 | -0.303 | 6.14 | 15.19 | 33 | -- | -- |
| 82.23 | 0.422 | 8.29 | -0.692 | 0.716 | 2.01 | -0.492 | -- | -0.284 | 6.19 | 14.24 | 32 | -- | -- |
| 82.68 | 0.423 | 8.29 | -0.727 | 0.72 | 1.95 | -- | -0.23 | -0.287 | 6.34 | 15.2 | 33 | -- | -- |
| 82.66 | 0.423 | 8.29 | -0.694 | 0.727 | 1.94 | -- | -- | -0.28 | 6.42 | 15 | 44 | -- | -- |
| 105.54 | 0.481 | 8.3 | -0.642 | -- | 1.57 | -- | -0.328 | -0.227 | -- | 15.2 | 22 | -- | -- |
| 120.18 | 0.514 | 8.23 | -0.312 | 0.616 | -- | 0.355 | -- | 0.000712 | 9.87 | -- | -- | -- | -- |
| 120.6 | 0.514 | 8.23 | -0.299 | 0.618 | -- | -- | -- | 0.000499 | 9.66 | -- | -- | -- | -- |
| 105.55 | 0.478 | 8.29 | -0.601 | -- | 1.63 | -- | -- | -0.216 | -- | 13.78 | 8 | -- | -- |
| 94.2 | 0.452 | 8.26 | -- | 0.668 | 1.64 | -- | -- | -0.16 | 6.95 | 11.21 | 44 | -- | -- |
| 143.27 | 0.559 | 8.24 | -0.305 | -- | -- | -- | -- | 0.00155 | -- | -- | -- | -- | -- |
| 122.96 | 0.519 | 8.22 | -- | 0.619 | -- | -- | -- | 0.0338 | 9.7 | -- | -- | -- | -- |
| 114.36 | 0.498 | 8.27 | -- | -- | 1.43 | -- | -- | -0.127 | -- | 12.25 | 4 | -- | -- |
| 145.72 | 0.563 | 8.23 | -- | -- | -- | -- | -- | 0.0353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 13 | 80.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 14 | 80.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 17 | 80.71 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 25 | 81.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 29 | 81.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 44 | 81.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 51 | 82.05 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 67 | 82.25 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 71 | 82.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 111 | 82.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 131 | 82.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 158 | 82.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 165 | 82.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 190 | 82.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 265 | 82.98 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 306 | 83.09 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 369 | 83.24 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 373 | 83.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 384 | 83.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 6 |
| 390 | 83.28 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 444 | 83.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 453 | 83.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 474 | 83.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 490 | 83.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 597 | 83.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 649 | 83.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 659 | 83.94 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 685 | 83.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 16 |
| 717 | 84.07 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 772 | 84.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 780 | 84.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 784 | 84.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 785 | 84.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 882 | 84.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 898 | 84.57 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 941 | 84.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |