Os06g0166200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os06g0166200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.86 | 0.338 | 11.4 | -0.488 | 1.31 | -0.554 | -0.706 | 1.42 | -1.69 | 16.9 | 20 | 1442 | -- | -- |
| 55.05 | 0.346 | 11.4 | -0.398 | 1.26 | -0.584 | -0.794 | -- | -1.63 | 17 | 29.96 | 1730 | -- | -- |
| 53.12 | 0.339 | 11.4 | -0.489 | 1.3 | -0.558 | -- | 1.39 | -1.69 | 16.9 | 20 | 1443 | -- | -- |
| 55.62 | 0.347 | 11.3 | -0.396 | 1.24 | -0.616 | -- | -- | -1.64 | 17.1 | 29.99 | 1730 | -- | -- |
| 81.96 | 0.422 | 11.3 | -0.509 | -- | -1.34 | -- | 0.717 | -1.63 | -- | 38.24 | 546 | -- | -- |
| 67.1 | 0.384 | 11.3 | -0.343 | 1.3 | -- | -0.757 | -- | -1.53 | 17 | -- | -- | -- | -- |
| 68.56 | 0.388 | 11.3 | -0.344 | 1.29 | -- | -- | -- | -1.54 | 17 | -- | -- | -- | -- |
| 83.09 | 0.425 | 11.3 | -0.424 | -- | -1.35 | -- | -- | -1.72 | -- | 39.23 | 548 | -- | -- |
| 59.2 | 0.358 | 11.3 | -- | 1.24 | -0.6 | -- | -- | -1.62 | 17.1 | 29.99 | 1730 | -- | -- |
| 156.24 | 0.584 | 11.3 | -0.391 | -- | -- | -- | -- | -1.57 | -- | -- | -- | -- | -- |
| 71.69 | 0.396 | 11.3 | -- | 1.3 | -- | -- | -- | -1.5 | 17 | -- | -- | -- | -- |
| 87.39 | 0.435 | 11.3 | -- | -- | -1.38 | -- | -- | -1.68 | -- | 39.82 | 548 | -- | -- |
| 160.28 | 0.591 | 11.3 | -- | -- | -- | -- | -- | -1.53 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.21 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 48.97 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 4 | 49.15 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 6 | 49.70 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 8 | 49.70 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 9 | 49.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 10 | 49.83 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 11 | 49.83 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 18 | 49.84 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 44 | 50.09 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 45 | 50.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 51 | 50.45 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 52 | 50.46 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 61 | 50.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 85 | 51.11 | radiation | 30.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 114 | 51.36 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 115 | 51.37 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 134 | 51.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 138 | 51.51 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 159 | 51.71 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 177 | 51.74 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 178 | 51.75 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 192 | 51.85 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 197 | 51.85 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 203 | 51.85 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 22 | 19 |
| 212 | 51.86 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 220 | 51.86 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 322 | 51.90 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 329 | 51.92 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 346 | 51.93 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 381 | 51.98 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 406 | 52.07 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 409 | 52.10 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 417 | 52.13 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 422 | 52.13 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 444 | 52.18 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 480 | 52.28 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 495 | 52.30 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 502 | 52.31 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 507 | 52.32 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 551 | 52.36 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 592 | 52.46 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 621 | 52.48 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 632 | 52.50 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 717 | 52.52 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 720 | 52.52 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 764 | 52.56 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 770 | 52.57 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 819 | 52.64 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 826 | 52.65 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 6 | NA |
| 877 | 52.74 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 914 | 52.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 971 | 52.80 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 3 |